Vitis riparia (riverbank grape): 117907011
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Entry
117907011 CDS
T07274
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
vri
Vitis riparia (riverbank grape)
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vri03016
]
117907011
Enzymes [BR:
vri01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
117907011
Transfer RNA biogenesis [BR:
vri03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
117907011
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TraT
TRAM
Motif
Other DBs
NCBI-GeneID:
117907011
NCBI-ProteinID:
XP_034676218
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Position
18:complement(25419598..25456725)
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AA seq
618 aa
AA seq
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MEDIEDLLVGNGVGGAPPGFRLPLASVGFNPKQNKNKPNLEKKSHIQDSIIPGTQTIYMK
TFGCSHNQSDSEYMAGQLAAFGYVLSDNPEEADLWLINTCTVKSPSQSAMDTLITKGRSS
KKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLNRKTLPALDL
PKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVGRVRTVIADGVKEIWLS
SEDTGAYGRDIGVTLPILLNAIVSELPSDGGTMLRIGMTNPPYILEHLKEMAVVLRHPCV
YSFLHVPVQSGSDAILSAMNREYTVTEFRTVVDTLTELVPGMQIATDIICGFPGETDEDF
AQTVSLIQEYRFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSIFEAFTPYNGME
GRVERIWISEIATDGIHLVGHTKGYMQVLVVAPRSLMGTSAIVKITSVGRWSVFGELIET
LNQINENISLKEEKFSLGKCSPCSVPVEICACSREAEPCACEPQSCEGKISMEEGSVSRK
DMLPENQNGQNLFKWLLRRRKNHRQKRVENGIAWGSKEKEERDRGCMNHWGLVDRVLLGG
IFVSILTIVALILHLGFW
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggaagacatagaagacttgctggttggcaatggagttggtggagcccctcctgggttt
cgactaccgttggcctctgttgggtttaaccccaagcagaataaaaacaaacccaacctg
gaaaagaaatctcatatccaagattctataattccgggcacccagacaatttatatgaag
acttttgggtgctcgcataaccagagcgacagtgaatatatggcaggtcagcttgcagca
tttggttatgtattaagtgacaatcctgaggaggcagacttgtggctgataaacacgtgc
acagttaagtccccaagtcagtctgctatggacaccctaataactaaaggtagaagttca
aaaaagcctctggtagtggcagggtgtgttcctcaaggaagtagagacttgaaagaacta
gaaggagtcagtatagttggagtccagcaaattgaccgtgtggttgaggttgtagaagag
actttaaaaggtcatgaggtgcgacttttgaaccgcaagacgctgccagcacttgacctc
ccaaaggtgagaaagaacaagtttgttgagattcttccaattaatgttggttgtttaggt
gcttgcacttattgcaagacaaagcatgctcgtggtcatttaggaagctacactgttgac
agccttgtagggcgtgtaagaacagttatagctgatggagtgaaggagatatggttgagt
agtgaagatactggagcatatggtcgtgacattggggttactcttccaattttgttgaat
gctattgtttctgaacttccctctgatgggggcacaatgcttcgcattggaatgactaat
cctccttatattctggagcacttgaaagagatggcagttgttttgcgtcacccgtgtgta
tactcctttcttcatgtaccagtccaatctgggagtgatgccatcttgagtgcaatgaat
cgagagtataccgtaactgagttcaggactgtggtagacaccttgactgaacttgttcca
ggaatgcagattgcaactgatataatatgcggttttcctggtgaaacagatgaagatttt
gctcaaacagtcagcctcatacaggagtataggttcccccaagttcatatttctcaattc
tatcctcggcctgggacacctgcggccaggatgaaaaaggtcccaagtgctgtagtgaag
aaacggagtcgtgaattgacttctatttttgaagcttttacaccatataatggaatggaa
ggcagagtggaaagaatatggataagtgaaattgcaactgatggaattcacctggttggc
catacgaagggatatatgcaggtgcttgtggttgcaccacgaagcctgatgggaacgtca
gctattgtgaaaataacatctgtgggaaggtggtcggttttcggagaactgattgagact
ctcaaccaaataaatgagaatatatctttgaaggaggaaaagttcagtctgggcaaatgt
tctccctgctctgtcccagttgaaatttgtgcgtgttcaagggaggcagaaccttgtgct
tgtgaaccacaaagctgtgaaggaaaaattagtatggaggaaggctctgtttcaaggaag
gacatgttgccagaaaatcaaaacggccaaaacctattcaaatggctactaaggaggcgg
aagaaccacagacagaaaagggtagagaatggaattgcatggggatccaaggaaaaggaa
gaacgtgaccgaggatgcatgaaccattggggtctagttgatagggttcttctgggtgga
atatttgtgagcatcttgacaattgtagctttaattttacatctaggattttggtag
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