Vitis riparia (riverbank grape): 117916353 Help Entry 117916353         CDS       T07274                                  Name (RefSeq) DNA ligase 1-like   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism vri  Vitis riparia (riverbank grape) Pathway vri03030   DNA replication vri03410   Base excision repair vri03420   Nucleotide excision repair vri03430   Mismatch repair Brite KEGG Orthology (KO) [BR:vri00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     117916353    03410 Base excision repair     117916353    03420 Nucleotide excision repair     117916353    03430 Mismatch repair     117916353  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:vri03032]     117916353    03400 DNA repair and recombination proteins [BR:vri03400]     117916353 Enzymes [BR:vri01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      117916353     6.5.1.6  DNA ligase (ATP or NAD+)      117916353     6.5.1.7  DNA ligase (ATP, ADP or GTP)      117916353 DNA replication proteins [BR:vri03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     117916353  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      117916353 DNA repair and recombination proteins [BR:vri03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      117916353    NER (nucleotide excision repair)     Other NER factors      117916353    MMR (mismatch excision repair)     Other MMR factors      117916353 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase CoV_nucleocap Presenilin Motif Other DBs NCBI-GeneID:  117916353 NCBI-ProteinID:  XP_034688198 LinkDB All DBs Position 6:3608820..3645006 Genome browser AA seq 788 aa AA seqDB search MLGLRSCHCLGHNPLSRNLNLRFSPPLSVSFKSFSLNSLFSSSPNPKTKPKHQPKRKPTM SSLPSAFDALMSKARAAAKKKPQSQSESQSQSESQSQSSSPKKRKTQTQTPDLAPPKKST NSQTPDSKIEPLDALPAKKPKKVDVEECIGQLRKKAADFNPKTAAYWEDKPVPFLFLVRA FDMISKETGRIVITDIVCNMLRTVMHATPDDLVAVVYLSANRIAPAHEGLELGIGDASII KALAEACGRKEEQIKSQYKALGDLGLVAKACRSSQSLMRKPDPLTVVKVFNTFGLIAKES GKDSQEKKKNHIKTLLVAATDCEPQYLIRLLQTKLRIGLAEQTLLTALGQAAVYNDKELT QPPPHIQSPLEEAANIVKQSYSVLPVYDKIVPALLSGGVWNLPKTCSFMPGVPVGPMLAK PTKGVSEIIDKFQDMEFTCEYKYDGERAQIHYKEDGSVEIYSRNAERNTGKYPDVVVAVS RLKKSSVSSFVLDCELVAYDRQKGKILPFQVLSTRARKNVVMSEIKVDVCIFAFDILYRN GQPLLQEQLKIRREHLYESFEEEPGFFQFATAITSNDLEEIQKFLEAAVDTSCEGLIIKT LNGDATYEPSKRSHNWLKLKKDYMENIGDSLDLVPIAAFHGRGKRAGVYGAFLLACYDSN KEEYQSICKIGTGFSEAVLEERSASLRSKVISRPKPYYRYADSIDPDVWFEPTEVWEVKA ADLTISPVHRAAVGIVDPNKGISLRFPRLVRIRDDKNPEQASSSDLVAEMYNGQKLNHQS NQDENEED NT seq 2367 nt NT seq  +upstreamnt  +downstreamnt atgttgggtctgcgttcatgccactgtctcggccacaaccctctctctcgcaatctcaac ctccgcttctctcctcctctttcggtctcattcaaatccttctctcttaattctttattc tcgtcaagccctaaccctaagactaaacctaaacaccaacctaaacgtaaacccaccatg tcctctctcccctccgccttcgatgctctcatgtccaaagcccgagccgcggccaagaag aagccccaatcccagtccgaatcccaatcccagtccgaatcccaatcccaatcctcgtct ccgaagaagcgcaaaacccaaactcaaaccccagaccttgccccacctaaaaaatctacc aattcccaaacccccgattccaagatcgagccattggatgcgttgccggcgaagaaaccg aagaaggttgacgtcgaagagtgtattgggcaattgaggaaaaaggcggcggatttcaat cccaaaacggcggcgtattgggaggacaagccagttccatttctttttcttgtcagggct tttgatatgatttccaaggagacgggtcggattgtgattacggatattgtgtgcaatatg ttgaggacggtgatgcacgccaccccggacgatttagtagcggttgtctatctttcagcc aacaggattgcaccggcgcatgagggcttggagcttggaattggggatgcgtcaattatt aaggcacttgcggaagcctgtggaagaaaagaagagcagattaagagccagtacaaggca ttgggagatttggggcttgttgcaaaagcatgccgatcatcccagtctctgatgcgcaag cctgatccattaaccgttgtcaaggtttttaatacatttggacttattgccaaggaatct ggaaaggatagtcaagagaagaaaaagaaccatatcaagacacttcttgttgcagccact gactgcgagccacagtatttaattcgtctacttcagacgaagttgcgaattggtttggca gagcaaactctgttaactgcattgggacaagctgctgtatataatgacaaagagttgaca caaccacctccacatatccagtcgcctctagaggaggctgcaaatattgttaagcaatcg tactctgtacttcctgtttatgataaaatagtccctgctcttcttagcggtggtgtatgg aatcttccaaagacatgtagctttatgccaggtgtccctgttggacctatgctagcaaaa ccaaccaagggggtatctgaaatcattgataaattccaggatatggaattcacctgtgaa tacaaatatgatggagaacgtgctcagatacactacaaggaggatgggtcagttgagata tatagtcgcaatgctgaacgaaatactggaaagtatcctgatgttgttgttgcagtttca agattaaagaagtcatctgtgagttcgtttgttttggattgcgaactagttgcctatgac cgtcaaaaggggaaaattttgccattccaggtcctcagcacccgtgctcgtaaaaatgtg gttatgagtgaaatcaaggttgatgtttgcatatttgcttttgacattttgtatcgtaat ggccaaccacttcttcaagagcagctcaaaattcgtcgtgagcatctttatgagtcattt gaggaagaacctggatttttccagtttgcaacagcaataacatcaaatgatcttgaggaa atacaaaaattccttgaagctgctgttgataccagttgtgaaggcttgatcattaaaaca ttgaatggagatgctacatatgagccttcaaagcggtcacataactggctaaaattgaag aaagattacatggagaatattggtgactcgcttgatctagtacctatagctgctttccac ggtcgcgggaaacgtgcaggtgtctatggtgccttcctccttgcttgttatgacagcaat aaagaagaatatcaaagcatttgtaagataggcactggattttctgaggcagtgcttgaa gaacgctcagccagtcttcgttctaaagtgatttccagaccaaagccttactatcggtat gctgattcaattgatccagatgtatggtttgaacccactgaggtttgggaggtgaaagct gcagacttgaccattagccctgttcatcgtgctgcagttggaatagtggatcctaacaag ggtatttctcttcggtttccacgtctggttcgcattcgagatgataagaatccagagcaa gcgtcgtcatctgacttggttgctgagatgtataatggccaaaagctcaatcaccagtcc aatcaagatgaaaatgaagaagactga

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