Vitis riparia (riverbank grape): 117920829
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Entry
117920829 CDS
T07274
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117920829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vri03021
]
117920829
Enzymes [BR:
vri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117920829
Transcription machinery [BR:
vri03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
117920829
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
117920829
NCBI-ProteinID:
XP_034694368
LinkDB
All DBs
Position
8:complement(21638415..21658488)
Genome browser
AA seq
1691 aa
AA seq
DB search
MAHVIEGTTEFVEAVKFSFFTDEEVRKYSFKKITSPLMLDSVQRPVPGGLYDPALGPIDE
NTPCQSCGQRSFYCPGHCGHIDLVSSVYNPLLFNLLHNLLQKTCFFCHHFKTSSSLVQKY
VSQLELISKGDVVGAKNLDSISPSQSSYPEDSDGSHVSCSSTVNSSARDNCSEHLKQQEW
TSLQCIEAMSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFHMAGLSDAQTRANVIRGSK
LERPLSRVAEEKSSSEVENVNDMFPWGDDVDTDETHSSIAPTDGIQDTVTKKLERKGAQA
PIEFIKQKSFFSGPLLPSEVRDIMERLWENEAEFCSFISDILQERLGASGNKAGYSMFFL
ETILVPPIKFRPPSKGQISVMEHPQTVLLGKVLQANIALGNAHANNSERSKIISRWMDLQ
QSINVLFDGKTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAV
NEIGIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVNKKMR
ISISRKLPSSRGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRV
LKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIR
GLIQDHIVSAVLLTKKDTFLTREQYNQLLYSSGLSSGSGSFVGKPGKKVSVLDSEDEMQP
LLPAIWKPEPLWSGKQVITAVLNHITRGRKPFTTEKDGKIPREYFGSEIDEKKSGKGKDP
GSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLSV
LSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENIGELVHCKFIGSNHGKIDPV
KLQVEVEKIILSNGEAAITRLDRMMKNELNELTSKVNKDLLLKGLVKPFPKNCLSLMTTT
GAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTGLH
PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGSIVQFNYG
DDGVDVHQTSFITEFEALAVNQEVVCEKFGQDGKFNGYIQKLPKELRKKTKKFIEGFMEE
RQDFDNMKKQKDFVNLVKQKYISSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEV
NVTLGIPRLQEILMTAANDIKTPIMTCPLQMGRSKDDAERLAAKLKKVTVADITESMEVS
IVPFTVQDHQTCSIYKLKMKLYEPALYPPHTGISLEDCEETLEAVFVRELEDAIQNHLLL
LSKISGIKNFLPDSRSMASKETDEDASGDGSTGGNGDEDADGEDDGGAEDLGLDAQKRKQ
QASDEMDYGDSEGEPDEGEPSAGLTEEIDLVEDEVEISNNEEVGISDPKDEDSKVPSKSK
SSKNKKAKTEAKRKKRFRAIKKDFDRAILVKAKGTYFEVHFRFTNEPHILLAQIAQKAAN
KVYIRSSGKIDLCQVIDCNKDQVIYYGRDPKKRENIPGEEKKKLPALQTAGVDFTAFWKM
QDELDVRYVYSNNVHAMLNTFGVEAARATIIKEVFNVFNAYGVKVNIRHLSLIADFMTHS
GGYRPMNRHGGIAESVSPFSKMTFETASKFIVEAASHGMTDNLESASARICLGLPVKMGT
GCFDLMQKIEI
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atggcgcacgttatcgagggcaccacggaatttgttgaagctgttaaattcagtttcttc
actgatgaagaggttaggaagtatagttttaagaagattacaagtcccctcatgctcgac
agtgtgcagagaccagtacccggtggactgtatgatccagcattggggccgatagacgaa
aacacaccttgtcaatcatgtggccagcgttcattttattgcccaggtcattgtggtcat
attgaccttgtttcatcagtctacaatcccttattatttaatctgcttcacaatcttcta
caaaaaacttgtttcttctgccatcacttcaagacaagcagcagcctggtccaaaaatat
gtttctcaattggaactcataagcaagggtgatgttgttggggccaaaaatttggattca
atctcaccaagtcaatcttcatatcctgaagacagtgatgggagtcatgtatcatgttct
tctacagttaattcaagtgcacgagataattgctctgagcatttgaagcagcaagaatgg
acctctcttcagtgcattgaagcaatgtctgttatggataattttctgaagctgaaacat
agagattgtaaaaattgcaaagccaagagtcctcaagtcaccaagcctacttttggatgg
tttcacatggctggcttgtcggatgcacagactagagctaatgttattaggggcagcaag
ctggaaaggccattaagtagggttgcagaggagaaatcttcatctgaggtagagaatgtt
aatgatatgtttccttggggagatgatgttgacacagatgaaacacattcatctatagca
cccactgatggaattcaagatactgtgaccaaaaagcttgaaaggaaaggggcacaagcg
cctattgaattcattaagcaaaagagtttcttttcaggtcctctgttaccatctgaggtt
agagatattatggaacgtttgtgggaaaatgaagctgaattctgctcgtttatcagtgat
attctacaggaacgtcttggtgcatcaggaaataaagcaggttactctatgttttttctg
gagaccattcttgtacccccaatcaaattccgcccaccttccaaaggacaaatttctgtg
atggagcatccccaaactgttttattaggtaaggtgttgcaggccaatatagctttggga
aatgctcatgctaacaactcagaacgttcaaagattattagtaggtggatggatcttcag
caatctattaatgtcttgttcgacggcaaaactgctgcaggtcaaggtcaaagagatact
ggttctggaatatgtcagttgctggagaaaaaggagggtgtgttccgccagaaaatgatg
ggaaagagggttaattttgcttgccggtctgtcatatccccagatccttatttagctgtt
aatgaaattgggattcctccatattttgcattgagattgacatatcctgagaaagtaact
ccttggaatgttgtgaagttgagggatgctattattaatggtcctgaaatccatcccgga
gctacacactatgttgacaaattgtctactgtgaaactggcggtaaacaaaaaaatgcga
atttcaatttcgaggaaactgccttcctcaagaggcgttgttgcacaacctgggaggagt
tctgataatgaatttgaaggcaaaattgtatatcgccacttacaggatggagatattgtg
cttgtcaatcgacagcctacacttcataagccaagtataatggcacatgtagttcgtgta
ttgaaaggggagaaaacacttcgcatgcactatgcaaattgcagtacctacaatgctgat
tttgatggtgatgagatgaatgtccatttcccacaagatgaaatttctcgtgcagaagca
tacaatattgtaaacgcaaataatcaatacattgttccatcccgtggtgatcctataaga
ggcctgattcaggatcacattgtatctgctgtacttcttacaaagaaggataccttttta
actcgtgagcagtataatcagcttctctacagttctggtctgtcttctgggtctggttct
ttcgttggcaaacctggcaaaaaagtttctgttttagattccgaagatgagatgcagccc
cttctgcctgcaatatggaaacctgagcctctttggtctggaaaacaggttataactgca
gtgctaaatcatataactaggggtcggaagccatttacaactgagaaagatgggaagatc
ccacgtgaatattttggaagtgagatagatgaaaagaaatccggcaaaggaaaagatcct
ggttctgacagaagaaaagaaaaacgaatagaaaaaaaacatggtgaatataaattgtta
attcataaaaacgagttggtgcgtggtgtgatcgacaaggcacagttcgacaaatatggt
ttggttcatatggtgcaggagctctatggctcaaacaccgcaggcattttgctttctgtg
ttgagccgcttatttactgtttttttgcagatgcatgggttcacgtgtggagtagatgac
cttttgatatcaccaaattatgacattgcaaggaagattgaacttgacaaaagtgaaaat
attggtgaattagtgcattgcaagttcattgggtctaatcatggaaaaatagatccggtg
aaactgcaagtggaagttgaaaaaattatactcagtaatggagaagctgccataacacgt
ttggataggatgatgaaaaatgagcttaatgaattaacctccaaggtcaacaaagacttg
ttgctgaaaggattagtaaaacccttcccaaagaattgcctctctcttatgaccactact
ggggctaagggtagcacggttaatttctcgcaaatatcttcttttctgggtcaacaagat
ttagaaggcaaacgagtccctcgaatggtttctgggaagacgttaccctgttttcctcca
tgggattgtgcagctcgagctggaggctttatcagtgatcgctttcttactggtcttcat
cctcaagaatattacttccattgcatggctggtcgtgaagggttagttgatacagctgta
aaaacatctcgtagtggatacctgcaaaggtgcctaataaaaaatcttgagtgccttaag
gtctgttatgattatactgtccgcgattcagatggctccattgttcaatttaattatgga
gatgatggtgtggacgtccatcaaaccagctttatcacagaatttgaagcgttggcagtg
aatcaagaagttgtttgtgaaaaatttggtcaagatggaaaattcaatggttatattcag
aagttgcctaaggaacttagaaagaaaacaaaaaaattcattgaaggttttatggaggag
cggcaagattttgataatatgaagaagcaaaaagactttgtgaacttggtgaagcagaaa
tacatctcgagtcttgcacagccaggagaaccagttggtgtgctcgctgctcagtcagtc
ggagaaccatcaacacagatgacactgaacacattccatcttgctggccgaggagaagta
aatgtgacacttggaatcccacgtctacaagagatcttgatgactgctgcaaatgatatt
aaaactccgattatgacttgccctcttcaaatgggaaggtcaaaggatgatgctgagcgt
cttgctgcaaaattaaagaaggttactgtggcagacataactgagagcatggaagtaagc
attgtgccattcacagttcaagatcaccaaacctgcagtatttataagcttaagatgaag
ctctatgaacctgcactctaccctccacacactggtatatctttggaagactgtgaggaa
actctggaagctgtgtttgtgagggaattggaggatgcaatacagaatcatctccttttg
ctctccaaaatcagcggcataaaaaatttcttgccagattcacgatctatggcctcaaaa
gagacagatgaggatgcttctggtgatgggtcgacaggtggaaatggtgacgaggatgct
gatggtgaggatgatggaggggctgaagatctaggtttggatgcacagaaaagaaaacag
caagcttcagatgagatggattatggagattctgaaggtgaacctgatgaaggggaacca
tcagctggacttacagaagaaattgatcttgtggaggacgaagttgaaattagtaataat
gaagaagttgggatatctgatcctaaagatgaagattccaaggtgccctctaagtctaaa
tcatcaaaaaacaaaaaggctaaaacagaagccaaaagaaagaagcggttcagagcaatt
aaaaaggattttgatcgagcaatcttggtgaaagctaagggaacatattttgaggtccac
ttcagatttaccaatgaacctcatattttacttgctcagattgctcagaaggctgcaaat
aaagtctacatcagaagttcggggaagattgatctgtgccaagtgattgactgcaacaaa
gaccaagtaatctactatggaagagatcccaaaaagagggaaaatattccaggagaggag
aagaagaaactcccagcgttgcagacagccggtgtggatttcactgcattttggaaaatg
caagatgagcttgatgtgaggtatgtatattccaacaatgtccatgctatgctgaatact
tttggggtagaagcagccagagcaaccataataaaagaggtgttcaacgtcttcaatgcc
tatggggttaaagttaacatccgccacctgtccctgatcgccgacttcatgacccattct
ggtgggtaccggccaatgaacagacacgggggcatagctgagtcagtatcaccattcagc
aagatgacttttgaaacagcttccaaattcatcgtggaagcagcatctcatggcatgacg
gacaacttggagtctgcatctgctcggatttgcctcggtctgccggtgaaaatgggtaca
ggatgttttgacttgatgcagaaaatagaaatttga
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integrated database retrieval system
