Vitis riparia (riverbank grape): 117927916
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Entry
117927916 CDS
T07274
Name
(RefSeq) DNA-directed RNA polymerase I subunit 2 isoform X1
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117927916
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vri03021
]
117927916
Enzymes [BR:
vri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117927916
Transcription machinery [BR:
vri03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
117927916
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpa2_4
RNA_pol_Rpb2_2
DUF5689
Motif
Other DBs
NCBI-GeneID:
117927916
NCBI-ProteinID:
XP_034703533
LinkDB
All DBs
Position
13:8611347..8663807
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AA seq
1178 aa
AA seq
DB search
MENGQALEKMATAGPDYEPLRELFQHHIDSFDHLVEFGLETLLMSVKPVEVVDSFTKQKL
RIWFGQPELYPPQKERSARTMRDALYPFECRQAKISYSGKLLADVCFQYGNGVVIREKFN
LGQFPIMLKSKLCHLRGADPQKLVSCKEESSEMGGYFILNGLERVVRLLILPKRNYPMSM
VRNSFRDRREGYTDKAVVIRCVREDQSAVTVKLYYLRNGSARLGFWIQGREYLLPVGVVL
KALIDTTDHEIYESLTCCYSEKYEGGKGAVGTQLVGERVKIILDEVRDLSLFTRHQCLQH
IGEHFQLVMDGLENESYSIVADAVLREYIFVHLDNNYDKFNLLIFMVQKLFSLIDQTSVP
DNPDVLQNQEVLLPGHLITIYLKEKLQEWLYKARRLLQDEINKSKNFEFSSLAHVKKVMD
KNPSRQISLAVENMLKTGRLVTQSGLDLQQRAGMTVQAERLNFLRFLSHFRAVHRGASFA
GLRTTSVRKLLPEAWGFLCPVHTPDGEPCGLLNHMASTCRITSYFDSRGNTRDFFKIRMS
ILSVLIGIGMTPALPKLVQAGPPEVLSVILDGRVVGSIPSSEVETAVNHLRRLKVSAISV
IPDDLEVGYIPLSMGGAYPGLYLFTSPSRFVRPVRNISIPSEEGHDIELIGPFEQVYMEI
RCPDGSDGGRRNIFPATHEEIHPTGMLSVVASLTPWSDHNQSPRNMYQCQMGKQTMAFSS
QAINCRADQKLYHLQTPQTPIVRTSAYVKYSMDEFPTGTNAIVAVLAYSGYDMEDAMILN
KSSVDRGLCHGQIYQTETIDLSDENNKSDRGQRMFRRSNVDKSANSLIDSDGLPYVGQMI
NPNEPYCSIYNEVTSSTRATKLKGSEPVIVDYVALDVKNKKHPQKVNIRFRRPRNPIIGD
KFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSL
HGKFVDATPFSDSLRKANGEAGSESSSLVDELGSMLTSYGFNYHGVEVLYSGVYGTELTC
EIFIGPVYYQRLRHMVSDKFQVRSTGTVDQVTRQPIKGRKRGGGIRFGEMERDSMLAHGA
AYLLHDRLHTCSDHHIADVCSLCGSILTTSIIQPQKRAVREIGGLPPGRAPKKVTCHACQ
TSKGMETVSMPYIFRFLAAELAAMNIKMTLQLSNGAGA
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacgggcaggctcttgagaaaatggctacggcaggcccagattacgagccgctg
cgagagctatttcagcaccatatcgactccttcgatcacttggtggagtttgggttggag
actctgctcatgagcgtgaaacctgttgaagtcgttgattcattcaccaaacagaagctt
cgaatttggtttgggcaaccggagttatacccacctcaaaaggagcgttctgcccggaca
atgcgcgatgcattatatcctttcgagtgtaggcaagcaaaaatttcatattcggggaag
cttttggctgatgtttgctttcaatatgggaatggagttgtcattagagaaaaatttaat
cttgggcagtttcctataatgttaaagtctaaactatgtcacttgagaggtgccgatccc
caaaagttagtttcttgcaaagaagagtcatcagaaatgggcggttacttcattttgaat
gggcttgagagagttgttcgacttctgatcttgccaaagcgaaactatccaatgagcatg
gtgcggaattcatttcgtgatcgccgagagggatatactgataaagcagttgtcataagg
tgtgtaagagaagatcaatctgcagtaacagtcaaattgtattaccttcgtaatggaagt
gcaagacttggattttggatacaagggagggaatacttgcttcctgtgggtgttgttcta
aaggctctgattgacactactgatcatgaaatttatgagagtttgacatgttgctacagt
gagaaatatgaagggggaaagggtgctgttggcactcagcttgtgggtgaaagggtgaaa
attatccttgatgaagttcgggatttgtctctttttacacgccatcaatgtctccagcat
attggagagcatttccaactggtgatggatggactggaaaatgaaagttattccattgtt
gcagatgcagttcttagagaatacatatttgttcaccttgataacaattatgacaaattc
aatctgctcatcttcatggtgcagaagcttttctcacttatagatcagacttctgtgcca
gacaaccctgatgtattgcagaatcaggaagtattactgcctggtcacttgatcactatt
tatctcaaggaaaaactacaagagtggctgtacaaggcaagacgacttcttcaagatgag
atcaacaaaagcaaaaatttcgaattcagcagcttggcccatgttaagaaggtcatggat
aaaaatccttcaagacaaatcagcttagctgttgagaatatgttgaagactggaagactc
gtcacacaatctggtttagatctacaacagcgtgcaggcatgactgttcaggcagaaagg
cttaattttcttcgttttctttctcattttcgagctgttcatcgtggggcttcatttgct
ggacttcgcaccacgagtgtgcgaaaattgctacctgaagcttggggttttctttgccct
gttcacacacctgatggggagccttgtggattgctgaaccatatggcttctacttgtcga
atcacatcatattttgattcccggggaaacactagagattttttcaaaataaggatgtct
attctcagtgttctgattggaattggaatgacacctgcactaccaaagcttgttcaagct
ggtcctcctgaagttctttctgttattttagatggtcgtgttgtaggctccataccttct
agtgaagttgaaacagctgtcaatcatctaaggagattaaaagtgtctgcgatttcagtg
attcctgatgatctggaggtgggatacattcctttgagcatgggtggtgcttatcctggt
ttgtacctgttcacatctccttctagatttgttcgaccagttagaaatatttctattcct
tctgaggaaggtcatgatattgaactcattgggccttttgaacaggtttatatggaaata
agatgtcctgatggtagcgatggaggaaggaggaatatttttcctgcaactcatgaagag
atccatcccactggaatgctcagtgttgttgctagtcttacaccttggtcggatcacaac
cagagcccgcgtaatatgtaccagtgtcagatgggaaaacaaacaatggctttctcttca
caagcaattaactgtcgggcagatcaaaagctataccatcttcagactcctcaaactccc
attgttcgtacaagtgcatatgtgaagtacagcatggacgaatttccaacagggacaaat
gcaattgttgctgttctagcatattcaggatacgatatggaggatgctatgattttgaat
aagtcatctgtggatagagggttgtgtcatggacaaatataccagacagaaactatcgac
ttatctgatgaaaacaacaaatcagatcgtggccaaagaatgtttagaagaagtaatgtt
gataagtcagcaaattccttgattgattcagatggacttccatatgttggtcagatgata
aatccaaacgaaccatattgtagtatctataatgaagtaacaagctcaacaagggctacc
aaattaaagggttcagagcctgttattgttgactatgttgctcttgatgtgaaaaataaa
aagcatcctcaaaaggtgaatattcgttttcggcgtcctagaaatcctattattggtgat
aaatttagtagcagacatgggcaaaaaggtgtttgctcgcagttgtggccagatatcgat
atgccattttcaggagttactggaatgcgcccagaccttattattaatccccatgcattt
ccttcaagaatgacaattgcaatgcttttggaatctgttgctgctaagggaggtagctta
catggaaaatttgtggatgcaacgccattttctgactcattaaggaaagctaatggagaa
gcaggatctgaatcaagttcacttgttgatgaactgggttccatgttaacctcttatggg
tttaattaccacggtgtagaggtattgtacagtggagtttatggtactgaactcacatgt
gagatttttattggacctgtttattatcagcgactccggcacatggtctcagacaaattt
caggttcgctccacaggaacggtagaccaggttactcgacaacctattaaaggaagaaag
cgtggtgggggtatccgttttggagaaatggaacgagactccatgcttgcacatggggct
gcatatttattacatgacaggcttcatacatgctctgatcaccacatcgctgatgtgtgt
tccctatgtggaagcatcctcacaacatcaatcatccagccacaaaagcgagcagtgaga
gagatcggaggactacctcctgggagggctcccaaaaaggtcacttgccacgcctgccag
acaagtaaaggaatggagacagtctcaatgccctacatttttagatttttggctgcagaa
ttagctgctatgaacataaaaatgacccttcagctaagcaatggagcaggggcctga
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integrated database retrieval system
