Vitis riparia (riverbank grape): 117930856
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Entry
117930856 CDS
T07274
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117930856
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117930856
Enzymes [BR:
vri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
117930856
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
117930856
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
LRIF1
AAA_22
GTP_EFTU
SRPRB
ATP_bind_1
Motif
Other DBs
NCBI-GeneID:
117930856
NCBI-ProteinID:
XP_034707505
LinkDB
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Position
14:complement(1271936..1278194)
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AA seq
427 aa
AA seq
DB search
MASSSAIRQVKLEKECELRVEVSENAPLRLRLLNGTAEIFGTEIPPEIWLSFPPRLKFAV
FTWYGATIEMDGITETDYTADETPMISYVNVHAVLEGRRNRAKASSSGDTEASQGPRVIV
VGPVDSGKSTLSRMLLSWSAKQGWKPTFVDLDIGQGSITIPGCIAATPIEMPIDPVDGIP
LEMPLVYFYGHTTPSVNVELYKVLVKELARTLERQFSGNAESRAAGMVINTMGWIEGVGY
ELILHAIDTFNANVVLVSGQEKLCSMLKDVLKNKPNVDVVKLQKSGGVVSRGAKFRQKAR
SYRIREYFYGLSNDLAPYSNVSNFSDLFVYRIGGGPQAPRSALPIGAEPAADPLRLVRVN
INRDMLHLVLAVSFAKEADQIVSSNVAGFIYVTDIDIQREKITYLAPSAGELPSRFLIVG
TLTWLES
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcctcgtcagcgataaggcaggtgaagctcgaaaaagagtgcgagctcagggtt
gaagtcagtgagaacgctcctctccgtctccggcttctcaacgggaccgctgagattttc
ggcaccgagattcctcccgaaatctggctctccttccctcctagactcaagttcgctgtt
tttacttggtatggagccacaattgaaatggatggtattacagaaactgattataccgcc
gatgagacacccatgatcagttatgttaatgtgcatgctgttctggaaggacgaagaaat
cgtgccaaagcctcttcatctggtgatactgaagcttctcagggcccaagggtgattgtt
gttggacctgtagattccgggaagagtacactgtcaaggatgcttcttagttggtctgct
aagcagggttggaagcctacttttgtggacttggacattggccaaggatctataaccatt
cctggatgtattgctgctaccccaattgaaatgccaattgatccagtggatggaattcct
cttgaaatgcctcttgtttatttctatggccacacaactcctagtgtcaatgtagagtta
tacaaagtgcttgtgaaggagcttgctcgaacactggagaggcagttctccggaaatgct
gaatctcgagctgctggcatggtgatcaataccatgggatggatagaaggtgttggttat
gagttgattctccatgctatagatacattcaatgccaatgttgttttggtttcgggtcag
gaaaaactttgcagcatgcttaaagatgtgctaaagaacaaacctaatgtggatgtcgtg
aaacttcaaaagtcaggtggtgttgtatccaggggtgcaaaattccgtcaaaaggccagg
agctacaggataagggaatacttttatggcctttcaaatgatcttgcaccatactccaat
gtttcaaatttcagcgatttatttgtctatcgtatcggcggtggcccccaagcaccacga
tcagctttgccaatcggtgcagagcctgcagcggatcctttgagattggttcgagtgaat
atcaatagggatatgctccatttagttcttgctgtttcttttgctaaagaagctgatcaa
attgtttcaagtaatgtagctggattcatctatgtcactgacatcgacatccagagggag
aaaattacataccttgcaccatcagcgggtgaacttcctagcagattcttgattgtaggg
accttgacatggcttgaaagctga
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