Vigna unguiculata (cowpea): 114191005
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Entry
114191005 CDS
T06017
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114191005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vun03019
]
114191005
Enzymes [BR:
vun01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
114191005
Messenger RNA biogenesis [BR:
vun03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
114191005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
SRPRB
AAA_22
FtsK_SpoIIIE
ATP_bind_1
ABC_tran
AAA_29
Motif
Other DBs
NCBI-GeneID:
114191005
NCBI-ProteinID:
XP_027935925
LinkDB
All DBs
Position
7:complement(40236255..40240256)
Genome browser
AA seq
438 aa
AA seq
DB search
MAYGGAGPVGGSGSASTIKQVKLERESELRIEVGNDAPLRLRLLNGTAEIFGTELPPEIW
LNFPPRLKFAVFTWFGATIEMDGATETDYTADETPMVSYVNVHAILDGRRSRAKASSPDD
SDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGSITIPGCIAATPI
EMPIDPVEGIPLEMPLVYFYGHATPSNNVELYKVLVKELSGMIERQFTGNTESRASGMVI
NTMGWIEGVGYDLLLHAIRTFKANVVLVLGQEKLCSMLKDVLKSEPKVDVVKLQRSGGVV
SRNAKVRQKARSYRIREYFYGLSNDLSPHSNIANFSDLFVYRVGGGPQAPRSALPIGAEP
AADPTRVVPVNINRDLLHLVLAVSFAKEPDEIISSNVAGFIFVTDIDIQRKKITYLAPSS
GELPSKYLIMGSLTWLET
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggcttacggtggtgcaggtcctgtgggtggttcgggctctgcatccaccattaagcaa
gtgaaattggagagagaaagcgaactcagaatagaagtgggtaacgacgcaccacttcgc
cttcgactccttaacggaactgctgaaattttcggcaccgagcttcctcccgaaatctgg
ctcaatttccctccccggctcaagttcgctgtgtttacttggtttggtgcgaccattgaa
atggacggagctactgaaactgattatactgcagatgagactcccatggtaagctatgta
aatgtgcatgccatactggatggaagaagaagtcgtgccaaagcttcatcacctgatgat
tctgatgcttctcagggtcccagggtcattgttgtaggacctactgattctggaaagagt
accttgtccaggatgcttcttagttgggcggctaaacaaggttggaagcctacctttgtt
gacttggatattggccaaggctctataacaattcctggatgcattgctgccactccaatt
gaaatgcccattgatcctgtggaaggcattccacttgaaatgcctcttgtatacttttac
gggcatgcaactccaagcaacaatgtagaattgtataaagtgctcgtcaaggagctttca
gggatgatcgagagacaatttactggaaatactgaatctcgagcttcaggcatggtgata
aatactatgggatggatagaaggagtaggctatgatttgctcttgcatgcaattcgtaca
ttcaaggccaatgttgtcttggttttaggtcaggaaaaattgtgcagcatgctcaaagat
gtgcttaagagtgagccgaaagtagatgttgtgaaacttcaaaggtcaggtggagttgta
tctaggaatgcaaaagtcaggcagaaggccagaagttataggataagggaatacttctat
ggcctttcaaatgatctttctccacattctaatattgcaaattttagtgatttgtttgtt
tatcgagttggtggtgggccacaggccccacgctcagccttgccaattggagcagaacct
gctgcagatccaacaagagttgtacctgtaaacataaaccgtgatttgctccatcttgtc
cttgctgtctcatttgccaaggaacctgatgagatcatttccagcaatgttgccgggttc
atttttgtgacagacattgatattcagagaaagaagataacataccttgctccgtcttct
ggagagcttccaagcaagtatttgataatgggatccttgacatggcttgaaacatga
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