KEGG   Vitis vinifera (wine grape): 100252267
Entry
100252267         CDS       T01084                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
  KO
K03010  DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03020  RNA polymerase
vvi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    100252267
  09124 Replication and repair
   03420 Nucleotide excision repair
    100252267
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vvi03021]
    100252267
   03400 DNA repair and recombination proteins [BR:vvi03400]
    100252267
Enzymes [BR:vvi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     100252267
Transcription machinery [BR:vvi03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     100252267
DNA repair and recombination proteins [BR:vvi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      100252267
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 100252267
NCBI-ProteinID: XP_002274051
UniProt: A5C1N0 A0A438JK85
LinkDB
Position
12:join(4655029..4655280,4656022..4656243,4656321..4656611,4656691..4656888,4657083..4657147,4657224..4657310,4657394..4657514,4657603..4657647,4657743..4657880,4658058..4658130,4658218..4658294,4658393..4658500,4658585..4658701,4658972..4659127,4659207..4659311,4659522..4659647,4659810..4659887,4659996..4660091,4660186..4660301,4660405..4660474,4660562..4660615,4660702..4660845,4661060..4661359,4661457..4661879,4661973..4662092)
AA seq 1193 aa
MYGEDEYDPTVVEEEEDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
DESADIEIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN
LTYSAPLYVDVTKRIIKKGHDLEEVTETQEFTKVFIGKVPIMLRSSYCTVYQNSEKDLTE
LGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPP
SSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSD
TQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVG
EYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD
VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY
ASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVG
SAANPILEFLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVKTLRQLRRQVD
VNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKRDIRALQLRESPEDGGWHD
LVSKGFIEYVDTEEEETTMISMTINDLISARLNPEEAYSETYTHCEIHPSLILGVCASII
PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ
LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR
PNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDSQGQASRYTRRDHS
TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED
MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA
LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP
AEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNS
FECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEVKPPKDQKKKGA
NT seq 3582 nt   +upstreamnt  +downstreamnt
atgtacggtgaagacgagtacgatccaacggtggttgaggaggaggaggatgatgatgag
gagatcactcaggaagatgcctgggcggtgatcagtgcctactttgaagagaagggtctg
gtgaggcaacagcttgattcgttcgacgagttcattcagaatacgatgcaagaaatcgtg
gacgagtcggccgatatcgagattcgccctgaatcgcagcacaatcccggtcggcagtcc
gatttccttgagactatctataagataagttttggtcagatatacctgagtaagccaatg
atgacagaatccgatggagaaactgctactttatttccgaaagctgccaggttaaggaac
ttgacctactcagctccattgtatgtcgatgttacaaagaggattataaagaaagggcat
gaccttgaagaggtcactgaaactcaggagttcaccaaagttttcattgggaaggttcca
attatgcttcgatctagttattgcacagtgtaccagaactcagagaaagatttaactgaa
cttggagagtgtccttatgatcaaggtgggtacttcattattaatgggagtgaaaaggtt
ctgattgctcaagagaagatgagcaccaatcatgtgtacgtgtttaagaagaggcagcct
aacaaatatgcttatgtggctgaggttcggtctatggcggaatcccaaaacaggccaccg
agtagcatgtttgtccggatgctttcaaggactagtgccaaagggggatcttcagggcaa
tatatccgtgctacccttccatatatacggacagaaatcccaataatcattgtgtttcga
gcattaggatttgtggccgacaaagatatattagagcacatatgctatgatttttctgat
actcaaatgatggagttacttcgcccgtccttagaagaggcatttgttattcaaaatcaa
caggttgcattggactacattggtaaaagaggatccactgtgggtgtcacgagggaaaag
aggatcaagtatgccaaagagatccttcaaaaggaaatgcttccgcatgtcggtgtgggg
gaatactgtgagactaagaaagcttactattttggatacatcattcatcggcttttactt
tgtgcacttggccgaaggccggaagatgatagggatcactatgggaacaagaggctggac
cttgctggtcctttacttggaggcctttttcgaatgttattcagaaagttaaccagggat
gtgagagcttatgttcagaagtgtgtggataatggaaaagatgttaacttacaatttgca
attaaagcaaaaacaattactagtggtctcaagtactctcttgctactgggaactggggg
caagcaaatgcagctggtactagagcaggagtatcacaggttttgaatcgtttaacctat
gcttccactctgtcgcacttacgaaggttaaactcacccatcggtcgtgaaggaaaattg
gcaaaaccacgacagttgcacaattcgcactggggaatgatgtgtcctgcagaaacacct
gaaggacaagcatgtggactagtgaagaatcttgcattaatggtgtacataacagtagga
tctgcagcaaatcctattttggagtttttggaggagtggagtactgaaaattttgaggaa
atatctcctgcagttattcctcagtcaaccaaaatttttgtgaacggttgctgggttggc
attcatcgtaaccctgatctgttggtgaagactttgagacagttgaggaggcaggttgat
gtgaacactgaagttggagttattcgtgatatccgtttgaaggaactccgtctttacaca
gactatggacgctgcagtaggccattgtttattgtggagaaacaaagactgctaataaag
aagagagatatccgagccttacagcttagagaatcccctgaggatggtggatggcatgat
cttgtgtcaaaaggattcatagagtatgttgatactgaggaagaggagactacaatgatt
tccatgacaatcaatgatctcatttctgcaaggctcaacccggaggaggcttattctgaa
acttacactcactgtgaaattcatccctcattaatattaggtgtttgtgcatctattatc
ccattccctgaccataaccagtctcctcgtaatacctaccaatcagctatgggaaagcaa
gccatgggaatttatgtcaccaattaccagttacgaatggatacgttagcctatgttctg
tactatcctcagaagccccttgttactacccgtgccatggagcatttgcattttaggcag
ctgccagctggcataaatgccatcgttgccattgcctgctactctgggtataaccaagaa
gattctgttattatgaaccaatcatcaattgatcgtggattcttccggtcactattcttc
cggtcatatagggatgaggagaagaagatggggacactggtgaaggaggattttgggcgt
ccaaatcgggaaaacaccatgggaatgcgacatgggtcttatgataaattggacgatgat
ggtcttgcacctcctggcacaagagtctcaggtgaggatgtcattattggcaagaccaca
cctatttctcaagatgattctcagggacaagcttcacgttatacacggcgtgatcatagc
acaagcttacgtcacagtgaaagtggcatggtagatcaggttctgttgacaacaaatgca
gatgggttaaggtttgttaaagtacggatgagatcagttagaataccacagattggtgac
aaattcagtagtagacatggtcagaaaggaactgttggcatgacttatactcaagaagat
atgccatggactgtggaaggcatcacccctgacatcattgtcaacccacatgctattcct
tctcgaatgacaattggccagcttattgagtgcatcatggggaaggttgctgctcatatg
gggaaggagggagatgctactcctttcacggatgtcactgtggacaatatcagtaaagct
ctccacaaatgtggttatcaaatgcgtggttttgagacaatgtacaatggtcatacaggc
cgacgattgactgctatgatattcctgggccctacttactaccagaggcttaagcacatg
gtggatgataagatccactcacgtgggaggggtccagtacaaatccttactagacagcct
gctgaggggcgatctcgtgatggtggtctccgttttggagaaatggaacgtgactgcatg
attgctcatggagcagcccacttcctcaaagaaaggttgtttgaccaaagtgatgcttat
agggttcatgtctgtgagcgctgtgggttgattgccattgcaaatctcaaaaagaactct
tttgagtgcagaggttgcaagaataaaaccgacattgttcaggtgcacattccatatgct
tgtaagctcctcttccaagagctcatggccatggccattgccccaaggatgcttacaaag
gaagtgaagccacccaaagatcaaaagaaaaaaggagcatga

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