KEGG   Vitis vinifera (wine grape): 100258335
Entry
100258335         CDS       T01084                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 5C isoform X1
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03020  RNA polymerase
vvi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    100258335
  09124 Replication and repair
   03420 Nucleotide excision repair
    100258335
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vvi03021]
    100258335
   03400 DNA repair and recombination proteins [BR:vvi03400]
    100258335
Transcription machinery [BR:vvi03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     100258335
  RNA polymerase III system
   RNA polymerase III
     100258335
  RNA polymerase I system
   RNA polymerase I
     100258335
DNA repair and recombination proteins [BR:vvi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      100258335
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N HORMA
Other DBs
NCBI-GeneID: 100258335
NCBI-ProteinID: XP_059597513
LinkDB
Position
13:join(24316270..24316293,24317235..24317510,24320939..24321112,24322605..24322718,24323171..24323296)
AA seq 237 aa
MRMASLNQSLEWESGKMESQAGSHGNGSCITADMEQGSIESYRYYLSRRTLFQMLSDRGY
NVPHSELTRSLSDFRASFGHNPDPSRLRICLPLISSPSKKILVVFCGTDEIRKAVIRVIF
QQINREGLHRLILVLQSKMNSHARKVVDEYPIKVEFFQITELLINITKHVSVPKHEILSA
QEKRKLVNKYKLEDKQFPIMQKDDAIARYYGLEKGQVVKITYKGGMTDSLVTYRCVS
NT seq 714 nt   +upstreamnt  +downstreamnt
atgaggatggcaagtttgaatcagtctctcgagtgggagtcggggaagatggagagccaa
gccggaagccatggcaatggaagttgcatcacagccgatatggagcaaggcagcatagag
agttacagatactacctctctcggagaaccctcttccagatgctctccgaccgcggctac
aacgtcccccactccgaactcacccgctccctctccgacttccgtgcctccttcggtcac
aaccccgaccctagccgtctccgcatttgccttcctctcatctccagtccctccaaaaag
attctagttgttttttgtggaacagatgaaataagaaaggctgtaattcgtgtcattttc
caacagattaacagagagggtttgcaccggcttatattagtcttgcaaagtaagatgaat
tcccacgctcgaaaagtagtggatgaatatccaattaaagttgagtttttccaaatcacg
gaacttttgattaatattacaaagcatgtttcggtgccaaagcatgagattctgagcgct
caagaaaagagaaagctggtaaacaaatacaagctggaagataagcagttccctattatg
cagaaagacgatgccattgcacgctactatggtctagagaaggggcaggtggtgaaaatt
acatacaaaggtggaatgactgattctttggttacctaccgctgcgtttcttga

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