Wallemia mellicola: WALSEDRAFT_52154
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Entry
WALSEDRAFT_52154 CDS
T03142
Name
(RefSeq) beta and beta-prime subunits of DNA dependent RNA-polymerase
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
wse
Wallemia mellicola
Pathway
wse03020
RNA polymerase
wse03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
wse00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
WALSEDRAFT_52154
09124 Replication and repair
03420 Nucleotide excision repair
WALSEDRAFT_52154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
wse03021
]
WALSEDRAFT_52154
03400 DNA repair and recombination proteins [BR:
wse03400
]
WALSEDRAFT_52154
Enzymes [BR:
wse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
WALSEDRAFT_52154
Transcription machinery [BR:
wse03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
WALSEDRAFT_52154
DNA repair and recombination proteins [BR:
wse03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
WALSEDRAFT_52154
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
18472576
NCBI-ProteinID:
XP_006959539
JGI:
Walse1_52154
UniProt:
I4Y971
LinkDB
All DBs
Position
Unknown
AA seq
1752 aa
AA seq
DB search
MSLGHQFSHSAAPVKGIKEVQFGLMSPEEMKSLSVAQIIHPEVIDESTGRPRQGGLMDPR
MGTIDRNFKCQTCGEGMAECPGHFGHIELARPAFHIGFLTKIKKIIESICVNCGRLLADE
NDPELAKIVRTVPVGKRRFEAVHAYCTKISICKPDEPNENGEDAPPSQPGHGGCGRLQPA
IRREALKLFSVNKQQKHDEEDDTKAQQDKRQLSAAEVYTLFKKIPDSDITLMGLSAEFAR
PDWMIITVLPVPPPPVRPSIAVDGGATRSEDDLTYKLADILKYTATLRRFESEGAPAHII
SENEQLVQFHVATYMDNDIAGIPQAMQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSA
RTVITGDPNLELDEVGVPFSIARTLTYPERVTPYNILYLQELVRNGPNEYPGARYVVRDT
GERIDLRYNRRADTFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMCHRVKLMPYSTFRL
NLSVTPPYNADFDGDEMNLHVPQSEETRAEMSQIASVTRQIVSPQANSPVMGIVQDALCG
VRKLTLRDTFLDSKQVANILMWVPGWDGIVPTPAIMKPKPLWTGKQILSLCIPRGINVFR
SNEQKSSAPVDDAGVCIEDGNIMYGAIDKSTVGKSQGGLVHVIFREKGHIICKDFLSGLQ
VVVNYWMLHHGFSIGIGDTIADKSTMAYITERIGDAKDKVKGIIQSAESNQLEAQAGMTI
RESFEASVNMELNQARDQVGKSAQHSLKDDNNVKQMVVAGSKGSFINISQMSACVGQQSV
EGKRIPFGFKYRTLPHFTKDDFGPESRGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVK
TAETGYVQRRLVKALEDIMVHYDGTVRNSLGDILQFAYGEDGMDGSAMEKQHFIGMSASD
EEFDRKFRIDLTDPVRGFKPGTLRVGLESAEGLQDKLDAEWKQLVDDRVLLREFIFKFRP
GDSTLPLPLNIRRTIQNAQQIFRIDRRQPSDIDPASIVDEVHALCRRLVVIRGSDVLSQE
AQENATLLFNILLRSSLTVRSIIEEHHLNREAFDWVIGEIETRFNQSIVAPGEMCGTLAA
QSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNIKTPSLTVYLDEETSRDIV
AVKNVQAELEHTTLKTITAATEIIYDPDPTTTIVDEDRDFVEAYFAIPDEEVAANINKQS
PWLLRLELDRAKMLDKRLEMNFVAGKIASLFQNDLFVIYSEDSAEKLIIRARIVGDDPTT
KEDDGVSEDVFLKKIENNMLSNISLRGIEGITRVFIVERKKEVIAEGGRFERQQEWVLET
DGVNLSEVLPVKHVDGTRTYSNHCQEIFEVLGIEAARNAILKELRNVIEFDGSYVNYRHL
ALLCDLMTNRGRLMAITRHGINRADTGALMRCSFEETVEILLEAAAIGEKDDCHGIAENV
LLGQMAPMGTGAFDVTLDIDMLKDVVVDPKLPAHRLNAQMAEGAMVVDEQGKMTPYSYGK
NSYEAQIVGDDQAQFSPIAQSGDDGSNFEYMGYGQTPLVTGGATSPGYSPSSPTWSPTSP
GYVPATSPAIGGAVSPWVPQSAASPGYSPSSPMVGISSPSYSPSSPRFSPSSPTYSPASP
SYSPTSPRYSPASPAYSPSSPKYSPTSPKYSPTSPQYSPTSPRYSPASPAYSPTSPTYSP
ASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPTSPSGANGVNGEQKPSWQ
TGNTSSGPSWKS
NT seq
5259 nt
NT seq
+upstream
nt +downstream
nt
atgagtttgggacatcaattcagtcacagtgctgcaccagtgaaagggatcaaagaggtc
cagtttggtttgatgagtccggaggagatgaaatctctatccgtcgctcagattatccac
cctgaagtcatcgatgaatctaccggtagaccgcgtcaaggcggtttaatggatccccgt
atgggaacaattgacagaaatttcaagtgtcagacttgcggtgaaggtatggctgagtgt
ccaggccattttggacatatcgagttagccaggccggcattccatattggtttcttgacg
aaaatcaaaaaaatcattgaaagtatttgtgttaattgtggtagattattggcggatgaa
aatgacccagaactcgcaaagatagttcgcaccgttccagtgggaaagaggcggtttgaa
gctgtacacgcgtactgtacgaaaatcagtatttgtaaaccggacgaaccaaatgagaat
ggtgaggatgcaccaccatctcaaccaggtcacggtggttgtggtcgtctacaaccagct
atcagaagggaagcattgaagttgttttctgtgaacaaacaacaaaaacatgatgaggag
gatgacacgaaagctcagcaggataagcgtcagctttcagctgcagaagtttacacgtta
tttaaaaagattccggatagtgacataaccctgatgggtctttcagctgaattcgctcgt
ccagattggatgattatcaccgttctcccagttcctccacctccagtccgtccttcaatt
gccgtcgacggtggtgctacccgctcagaagatgatctgacatataagctcgccgatatc
cttaaatacactgcaacacttcgtcgtttcgaatctgaaggcgctccagcgcacattatt
agtgaaaatgaacaattagttcaattccacgtagctacttatatggataatgacatcgct
ggtatacctcaagcaatgcaaaaatctggtcgtcctattaagtcgatcagagctcgtctg
aagggtaaggaaggtcgtcttcgtggtaacctcatgggtaaacgtgtcgatttctccgca
cgtactgtcatcactggtgatccaaatcttgaacttgatgaagtcggtgtaccattctca
attgcaaggacactcacttatccagaacgcgtaacaccttacaacattctctacctccaa
gaattggtacgaaatggtccaaatgaatacccaggtgctcgttatgttgttcgtgacaca
ggtgaacgtatagatttgcgttataatagacgtgcggacactttccttcaatacggttgg
attgtcgagagacatctcaaagatggtgatttcgtcttgttcaatagacaaccatcatta
cacaaaatgtctatgatgtgtcatagagttaaattaatgccatactcaactttcaggttg
aatttatcggtcactcctccatataacgccgatttcgatggtgacgaaatgaacttgcac
gtaccacaatctgaagaaactagagccgaaatgagtcaaattgcatcagtcactagacag
attgtttctccacaagctaattctccggtcatgggtattgtccaggatgcactctgtggt
gttcgtaaattgacacttcgagatacgttcttggatagtaaacaagttgcaaacatctta
atgtgggttccaggatgggatggtatagtaccaacaccagctattatgaaaccaaagcca
ttgtggactggtaaacagatactatcactctgtattccacgtggtatcaatgttttcaga
tcaaacgagcagaaatcatctgcaccagttgatgatgcaggtgtttgtatcgaagatggt
aacattatgtatggtgctatcgataagtcaacagttggtaaatctcaaggtggtcttgtt
cacgtcattttccgtgagaagggtcacatcatctgtaaagactttttgtctggattacaa
gttgtcgttaactattggatgctgcatcatggtttctctattggtattggtgatactatc
gctgataagtcaacaatggcatatattactgagcgtattggtgatgccaaagataaagtt
aaaggtatcattcaaagtgccgaatctaatcaattggaggcacaagctggtatgactatc
cgtgaatcatttgaagcgagtgtcaacatggaactcaaccaagctcgtgatcaagtcggt
aaatctgcgcagcattctctcaaagacgacaacaacgttaaacagatggttgttgccggt
tctaaaggttctttcattaatatttcacaaatgtctgcttgtgtcggtcagcaatctgtc
gaaggtaaacgtattccatttggtttcaagtatcgtacattaccgcacttcacgaaggat
gatttcggtcctgaatcacgtggtttcgttgaaaattcgtacctccgtggtttaacgcca
tctgagttcttcttccacgctatggctggtcgtgaaggtttgatcgatacagctgtcaag
acagcagaaactggttatgttcaaagacgtcttgttaaggcactagaggatattatggtt
cactacgatggtactgttaggaactcacttggtgacattcttcaattcgcctatggtgaa
gatggtatggatggtagtgccatggaaaagcaacactttattggtatgagtgcaagtgat
gaagagtttgatagaaaattccgtattgacctcacagatcctgtgcgtggatttaagcca
ggtacgttacgtgttggtcttgaatcagccgaaggtctccaggataagctggatgctgaa
tggaaacaactcgttgatgatcgtgtgttacttcgtgaattcatcttcaagttcagacca
ggtgattcaacactcccattacctttaaatattcgtcgtacgattcaaaacgcacagcaa
attttccgcattgatcgtcgtcaaccttctgacattgatcctgcttctattgttgacgag
gttcatgctctttgtcgacgtttggttgtcattcgtggtagtgacgtccttagtcaagaa
gctcaagagaatgctacattactgttcaacatccttctccgttcatctttgacagttagg
tctattattgaagagcatcaccttaacagggaggcatttgactgggttattggtgaaatt
gagacacgtttcaatcaatctattgttgcaccaggtgagatgtgtggtacactcgctgca
caatctattggtgaaccagctactcaaatgacattgaacactttccactatgcgggtgtt
tcgtcaaagaacgttacacttggtgttcctcgtctgaaggaaattattaacgtggctacc
aacattaagacgccatctcttactgtctacttagatgaagaaacttctagagatattgtt
gccgttaagaatgttcaagcggagttggaacacacgacacttaaaaccattacagcagcg
accgaaattatttatgatcctgatcctacaacgactatcgttgatgaggatcgtgacttt
gttgaagcgtacttcgccattccagatgaagaagtcgcagcgaatatcaacaagcaatcc
ccttggttgttacgtttggaattggatcgtgcgaaaatgcttgacaagcgattagagatg
aacttcgttgctggcaagattgccagtcttttccaaaatgaccttttcgtcatttactct
gaagattcagctgaaaagctgatcatcagagctagaatcgttggtgatgatccaacaact
aaagaggatgatggcgtttcggaggatgtattcttgaaaaagattgaaaacaatatgctt
tcaaatatctctcttcgtggtattgaaggtattaccagggttttcattgttgagcgtaag
aaggaagttattgcagaaggtggtagatttgagagacaacaagaatgggttttggaaact
gatggtgttaacttatctgaagttttacctgttaaacatgtcgatggcacacgtacatac
tctaaccactgccaagaaatctttgaagtacttggtattgaagctgcacgtaacgcaatt
cttaaggaattacgtaacgttattgaattcgacggttcttacgttaactaccgtcactta
gcattgttatgtgacttgatgacaaacagaggtagacttatggctatcactagacacggt
atcaatagagctgacactggtgcactcatgcgttgttccttcgaagaaactgttgaaatt
cttttagaagctgccgcgattggtgaaaaggatgattgccatggtattgcagagaatgtc
ctacttggtcaaatggcacctatgggaactggtgcatttgatgtcacacttgacattgat
atgcttaaggacgtagttgttgatccaaaactaccagcgcatagattgaacgctcaaatg
gctgaaggagcgatggttgtcgatgaacaaggaaagatgacaccatactcatacggaaag
aattcctatgaagctcagattgtcggtgatgatcaagcacagttctcaccaattgctcaa
tctggtgatgatggatctaactttgaatatatgggatatggacagacgccacttgttact
ggaggtgctacatcacctggttattcaccttcaagtccaacatggtcaccaactagtcca
ggatatgtacctgcaacttcacctgcgattgggggtgcagtttcaccttgggtaccacaa
tcagcagcatcccctggttactcaccttcgtcacctatggttggaatcagctccccatct
tacagtccaagctcacctcgcttcagtccatccagcccaacatattctcctgcatcacca
tcatatagtccaacttcaccacgctacagtccagccagtccagcctacagcccatcatct
ccaaagtactctccgacctctccaaaatattctcctacatcaccacaatactcaccaaca
tcgccacgatactctccagcttcaccagcatacagtccaacatctccaacgtacagtcca
gcaagtccagcgtactcaccagcatcacctgcgtactcacctgcttcaccggcttattca
cctgcttcaccagcgtactctccagcctcgccagcatactcaccagcttcacctgcttac
tcaccaacatcaccaagtggagctaatggcgtaaacggtgaacagaagccaagctggcag
actggtaatacatcttctggtccaagttggaagtcctaa
DBGET
integrated database retrieval system
