Xanthomonas cucurbitae: EBN15_08475
Help
Entry
EBN15_08475 CDS
T06553
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
xcz
Xanthomonas cucurbitae
Brite
KEGG Orthology (KO) [BR:
xcz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xcz03009
]
EBN15_08475 (rimO)
Enzymes [BR:
xcz01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
EBN15_08475 (rimO)
Ribosome biogenesis [BR:
xcz03009
]
Prokaryotic type
ribosomal protein modification factors
EBN15_08475 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
CLP1_P
TRAM
PrmA
Motif
Other DBs
NCBI-ProteinID:
QHG87029
LinkDB
All DBs
Position
1977719..1979092
Genome browser
AA seq
457 aa
AA seq
DB search
MSQLNPKVGFVSLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTE
SLDAIGEAMNANGKVIVTGCLGKRPEQIREAYPQVLAVSGPQDYQSVMEAVHAALPPRHD
PFVDLVPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLASRPVDEVLREAERLVR
GGVKELLVVSQDTSAYGVDLKYAERPWRDRMYQTRMKALCEGLSELGVWTRLHYVYPYPH
VDDVIPLMAEGKLLPYLDIPFQHASPRILKLMKRPGAVEKTLERVQRWKAMCPEITVRST
FIVGFPGETDAEFESLLEFLDQAQLDRVGAFAYSPVDGASANALPDPVPEAVKQERLARF
MARQAEISAARLDAKIGSVQQCLVDLIEDDIAVARSRADAPEIDGLVHIQNGGELGLKVG
DLVDVEITDSDEHDLFGDALPANVAIQQGRSLNLQMV
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagctgaaccccaaagtcggcttcgtcagccttggctgcccgaaggcgctcgtc
gattccgaacgcatcctcacccagctgcgcgtggagggctacgacattgtgcccagctac
gacgccgccgacgtggtggtggtcaatacctgcggcttcatcgattcggcggtgaccgaa
tcgctggatgccatcggcgaggcgatgaatgccaacggcaaggtcatcgtcaccggctgc
ctgggcaagcgcccggagcagattcgcgaggcctacccgcaggtgctggcggtgtccggc
ccgcaggactaccagagcgtgatggaagcggtgcacgcagcgctgccgccgcgtcacgac
ccgttcgtggatctggtgcccgactacggcatcaagctgaccccgcggcattacgcgtac
ctcaagatttccgaaggctgcaaccatcgctgcagcttctgcatcatcccgtccatgcgc
ggtgatctggcttcgcgcccggtggacgaggtgctgcgcgaggccgagcggctggtgcgt
ggcggggtcaaggaactgctggtggtgtcgcaggacacctccgcttacggcgtggacttg
aagtacgccgagcgcccgtggcgcgaccgcatgtaccagacccgcatgaaggcgttgtgc
gaaggtttgtcggagctgggcgtgtggacgcgcctgcattacgtgtacccgtacccgcac
gtggacgacgtgatcccgctgatggccgaaggcaagctgctgccgtatctggatatcccg
ttccagcacgccagcccgcgcatcctcaagctgatgaagcggcccggtgcggtggaaaag
acgctggagcgcgtgcagcgctggaaggcgatgtgcccggagatcacggtgcgctccacc
ttcatcgtcggtttccccggcgaaaccgatgccgagttcgaatcgctgctggagttcctg
gaccaggcgcagctggatcgcgtcggcgcgttcgcgtattcgccggtggacggcgccagc
gccaacgcgttgcccgacccggtgccggaagcagtgaagcaggagcggctggcgcgcttc
atggcccggcaggcggagatttccgccgcgcggctggacgccaagatcggcagcgtgcag
caatgcctggtcgacctgatcgaagacgatatcgccgtggcgcgttcgcgcgccgatgcg
ccggagatcgatggcctggtgcatatccagaacggcggcgagctcgggctgaaggtgggc
gacctggtcgatgtggagatcaccgacagcgacgagcacgacctgttcggcgatgcattg
ccggccaatgtcgcgatccagcaagggcggtcgttgaacctgcagatggtgtga
DBGET
integrated database retrieval system
