Xenia sp. Carnegie-2017 (soft corals): 124445891
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Entry
124445891 CDS
T08024
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
xen
Xenia sp. Carnegie-2017 (soft corals)
Pathway
xen03020
RNA polymerase
xen03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xen00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124445891
09124 Replication and repair
03420 Nucleotide excision repair
124445891
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xen03021
]
124445891
03400 DNA repair and recombination proteins [BR:
xen03400
]
124445891
Enzymes [BR:
xen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124445891
Transcription machinery [BR:
xen03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
124445891
DNA repair and recombination proteins [BR:
xen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
124445891
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
EutB
Motif
Other DBs
NCBI-GeneID:
124445891
NCBI-ProteinID:
XP_046852631
LinkDB
All DBs
Position
Unknown
AA seq
1882 aa
AA seq
DB search
MAIGSGVPAPLRKVERVQFGIFSPDELKQMSVTEGGVKYSETMEGGRPKLNGLMDPRQGC
SDRFSRCQTCAGNMTECPGHFGHIELSKPVFHVALIPKIIKVLRCVCFYCSKLLVDVDHP
RIKEIMMKTQGQARKRIAFVYELCKSKKICEGGDEIDDKNDINGDGGEAKKGHGGCGRYQ
PQIRRQGLELTAEWKHINEDSQEKKIILTAERVHEIFKRISDDECTIIGMDPKYCRPDWM
ILTVLPVPPLPVRPSIVMHGGSARSQDDLTHKLSDVVKCNNGLKRNELNGAAAHIIAEDT
KMLQYHVATLLDNEIPGIPKAMQKSGRPLKSIKQRLKSKEGRIRGNLMGKRVDFSARAVI
XPDPNLAIDQVGVPRMIAQNLTFPEIVTPFNIDRMQELVRRGSSHYPGAKYIIRDNGDRI
DLRFHPKPTDLHLQYGYKVERHLRDEDLIVFNRQPTLHKMSMMGHRVKVLPWSTFRLNLS
VTTPYNADFDGDEMNLHVPQSLEARAEISELMMVPRQVVTPQSNRPVMGIVQDSLTAVRK
FTKRDVMMEKDVVMNLLMWLPSWNGKLPVPAILKPKPLWTGKQIFSILIPGNVNMIRAHS
THPDDEDDGPYRHISPGDTKVLVEDGELLSGIICKKSLGTSSGSLVHVVAMELGHEIAKN
FYSEIQTCVNNWLLIEGHSIGIGDCIADNETYEVIQKTTKKAKDDVIQVIEKAHNDELEP
TPGNTLRQTFENQVNRXLNDCRDKTGSSAQKSLSEFNNFKAMVVAGSKGSKINISQVIAV
VGQQNVEGKRIPFGFNHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGL
IDTAVKTSETGYIQRRLIKAMESVMVAYDGTIRNSVNQVIQLRYGEDGMDATHIEFQNMP
SLKPNTAAFERKFHFETGIERRMKRFLQDEIVRDIAGSAGALQEIESEFSQLERDRDTLR
SIFPSGNSKVALPVNLSRLIWNAXKTFHINKRMPSDLHPVKIVQDVRKLSERLVVVKGDD
PISKQAQSNATLLFNILLRSTLCSKRVLEEFHLTSEAFDWIVGEIETRFNLAQVQPGEMV
GPLAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIMNVSKRPKTPSLTVFLVGKP
ARDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTVIEEDQDFVNVYYEMPDFDVTRI
SPWLLRIELDRKRMTDKKLTMEQISEKINMAFGDDLNCIFNDDNARKLVLRIRIMNNDDN
KMEEAEEQLDKMDDDVFLRCIEANMLTDMTLQGIEAISKVYMHLPQQDSKKRIVITEHGD
FKAIPEWLLETDGVSLMRVLSDQDVDPVRTTSNDICEIFSVLGIEAVRKAVEREMNHVIS
FDGSYVNYRHLALLCDVMTSKGHLMAITRHGINRQDCGALMRCSFEETVDVLMEAASHGE
VDHLLGVSESIIMGQLPRIGTGCFDLMLDAEKCKYGMEIPTHMISGGLFGSGPMAASGMF
FGMASSPTSGMSPQKTPWNQGATPNYQDAFSPGLGSGMTPGGAGFSPAGSDASGFSPAGL
SPGGWSPNPGSPGSPGGAASPYIPSPAHGGASPSYSPASPAFMPTSPSMSPTSPSYSPTS
PGYSPTSPNAGGFTPASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPFISSCSPILLQPLPPTSLTNFPTSPTYSPTSPNYS
PSSPQYSPTSPHSSLPPSPQYSPSSPQYSPNVPTSPHYSPSSPQYSPTSPNYSPTSPQYS
PTEDYSPVAPRYSPSSPTYSPSTPGGASNASPQYSPSSPQYSPSSPSYAPATPGYSPGSA
YSPSSPVYTPNADEEKDKKKKK
NT seq
5649 nt
NT seq
+upstream
nt +downstream
nt
atggcgattggatcgggcgttccggcacccttgcgcaaggttgagagggtgcagtttggt
atcttcagtcctgatgagcttaaacaaatgtcagttactgaaggtggtgtgaagtactca
gaaacaatggaaggagggagaccgaaacttaatgggttgatggaccctcgccagggatgc
agtgatcgtttttcacgttgtcagacctgtgcgggaaacatgacagaatgccctggccat
tttgggcacattgagttatcaaagcctgttttccatgttgctttgattccaaagattatc
aaagtgttgcgatgtgtgtgcttttactgttcaaaacttctggtggatgtggatcatccg
aggataaaagaaatcatgatgaagacacagggtcaagcaagaaagaggatagcttttgtt
tatgaactgtgtaaaagtaaaaaaatatgtgaaggtggtgatgaaattgatgacaaaaat
gacataaatggtgatggtggtgaggctaaaaagggtcatggtggttgcggtcgctatcaa
ccacaaatccgtcgtcaaggccttgagcttaccgcagaatggaaacacataaacgaggat
tcccaggagaagaaaatcattttaacggctgagagggttcacgagatatttaaaagaatt
tctgatgacgagtgcactatcatcggaatggatccgaagtattgtcgacctgactggatg
atcctaactgtcttgcctgtaccgccgcttcccgttcgaccatccatcgtaatgcatggg
ggaagtgctcggagtcaggatgatttaactcacaaactttctgacgttgttaaatgcaac
aatggtttgaaaagaaacgagttgaatggtgctgcagcgcacattattgccgaagatacc
aaaatgcttcagtaccacgttgccacattacttgacaatgagatccccggtattccaaag
gcaatgcaaaagtcgggtcggcctcttaagtctattaaacaaagactgaaaagtaaagaa
ggccgaatccgtgggaaccttatgggtaaacgtgtagatttctcagctcgtgctgttatc
nacccggatccaaatttagccattgatcaagtcggtgttcctcggatgattgcacagaac
ttgacctttccagaaattgtcacaccgtttaatattgatcgtatgcaagaacttgtacga
cgtggcagttcacattatcccggggcgaaatacatcattcgagacaacggggatcgcatc
gacttgcgttttcatccgaaaccgactgatctacatttgcagtatggatacaaggtggaa
cgtcatttacgagacgaagatttgattgtgttcaatcgtcaaccaactctgcacaaaatg
tctatgatgggtcatcgcgtgaaagtacttccctggtcaacttttcgtctcaatctcagt
gtgacaactccttataatgcggattttgatggagacgagatgaaccttcacgtgcctcag
tcacttgaagcacgtgccgagatatcagaactaatgatggtaccgcgacaagttgtcaca
ccgcagtctaacagacctgttatgggtattgtgcaagattcgctcaccgctgtacgaaaa
tttactaaaagggatgttatgatggagaaggacgttgtgatgaacttactcatgtggttg
cccagctggaatggcaagcttccggtgcccgccatcttgaaacctaaaccgctttggacc
ggaaaacaaatattttccatcctcattccgggaaacgtgaatatgattcgtgcccacagt
actcatcccgatgacgaagatgacggaccatatcgacacatatctcctggtgataccaag
gttttagtcgaggacggtgaactgttgtccggcattatctgcaagaaaagtttgggaact
tcatctggaagtttagttcatgttgttgccatggagttgggacatgaaattgcaaaaaat
ttctacagtgagatccagacgtgtgttaataattggttgttgatcgagggtcatagtatt
ggtattggcgattgtattgccgacaacgaaacatacgaggtcatccagaaaacaacaaag
aaagcaaaggacgatgtgattcaagtcatcgaaaaagcgcacaatgatgaacttgaacct
acacctggtaacacactaagacagacattcgagaatcaggttaatcgtnatttgaatgat
tgtcgagataaaactggcagcagcgctcagaaaagtttgtcggagttcaacaacttcaaa
gctatggttgttgcgggctcaaagggctccaagatcaacatttcacaggtcatcgcagtc
gtaggacagcagaatgttgaaggaaaacggattccgtttggtttcaatcatcggacgtta
cctcattttatcaaagatgattacggtccagaaagtcgaggttttgtagaaaattcctat
ctcgctggcctcactcctacggaattttttttccacgctatgggtggtcgtgaaggtctc
atcgatactgctgtgaagactagtgaaactggttacattcagcgtcgtctaatcaaggct
atggaaagcgttatggttgcctacgacggaactatacgtaattctgtgaaccaagttatt
cagttgcgttacggtgaggacggaatggacgccactcacatagagtttcaaaacatgcct
tcgttgaaaccgaatacggcggcattcgaaagaaagtttcattttgaaaccggaattgaa
aggaggatgaaaaggtttcttcaagacgagatagtgcgtgacattgccggaagcgcgggc
gcgcttcaagaaatcgagtctgaattctcccagttggaaagagatcgcgatacattgagg
tccatatttccgtctggtaacagcaaggttgctcttcccgtcaatcttagtcgacttatc
tggaacgcancaaagacttttcacattaacaaacgaatgcccagtgatcttcatcccgtg
aaaatagttcaagatgttcgtaaactgagcgaaagattggttgtggttaaaggagacgat
ccaatcagtaagcaagcgcagagtaatgccacattgctttttaacatactgctcagatca
accctctgctcgaaacgagtcctcgaagaatttcatttgacgtcagaggctttcgattgg
atagttggtgagatcgagactagatttaatttggcacaggtacagcccggtgagatggtt
gggccacttgcagcacagtctcttggtgagccagcaactcagatgacattgaatacgttc
cattacgccggtgtatcggctaaaaacgtcacgttaggtgtgcctcgtttgaaagagatc
atgaacgtttctaaaagacccaagacaccttcattgaccgttttcctggtcgggaaaccg
gctcgagatgccgaaaaagccaaggacgtcttatgccgacttgagcacaccactcttcgt
aaagttactgcaaacactgcaatttattacgatccggatccccagaatacagtcatcgaa
gaagatcaagacttcgtgaatgtgtactacgaaatgcctgactttgatgtcactcgaatt
tctccttggctcttgcgtattgagttggaccgaaagcgaatgacggacaagaaattgaca
atggagcagatatccgagaagatcaatatggcgttcggcgatgacttgaactgtatattt
aacgacgacaatgcgcgaaaacttgtccttcgtataagaatcatgaacaacgacgacaac
aaaatggaagaggcggaagaacaattggataaaatggacgacgatgtatttctgagatgt
atcgaagccaacatgttgacagatatgactcttcaaggaattgaagcaatttccaaagtt
tacatgcatttaccccagcaagatagcaagaagagaattgtgatcaccgagcacggcgac
tttaaagccattccagaatggctgctcgagacggacggtgttagtttaatgagggttttg
agtgatcaagatgtggacccggttagaacgacgtcaaatgatatttgcgaaatattctcg
gtccttggtatcgaagcggtgcgcaaggcagtggaacgcgaaatgaatcacgtcatctcg
tttgacggttcgtacgtgaattatcgccatttggcattgttgtgtgacgtaatgacttca
aaaggtcacttaatggctataactcgacatggtatcaacagacaagattgtggcgctctt
atgagatgctcgttcgaggaaactgttgatgtcttgatggaagcagcctcccatggtgag
gttgatcatcttcttggtgtaagtgaaagcattataatgggtcagttgccaagaataggc
accggatgcttcgatctcatgttggatgcggaaaaatgtaaatatggtatggaaatacct
acgcacatgatatctggtggtctttttggaagtgggcctatggctgcatctggaatgttc
tttggtatggcaagctctcctacatctgggatgtctcctcagaagactccatggaatcaa
ggtgcaactccaaattatcaagatgcattcagtcctggtttaggtagtggtatgacgcca
ggtggtgctggtttttcacctgctggttctgacgccagtggttttagtccggctggactc
agtcccggtggttggagtcccaaccctggatcacctggctctcctggtggtgctgctagt
ccgtacataccgagtccagcacatggtggtgcaagtcctagttattcaccagccagtcct
gcatttatgccaacatcaccatcaatgtcgcctacaagtccgtcgtattcgccaacatca
ccaggatattcacccacttctccaaatgctggtggattcacccctgcaagccctagttac
tcgccgacctcgccttcttactcaccaacctcaccttcctattcacctacgtcgccatca
tattcacctacgtcaccgtcctattcccctacctctccatcttacagtccaacatcaccg
tcttactctccaacttcaccttcttactctccaacctcaccttcctactcgccaacatca
ccctcctattctcccttcattagttcttgttctccaatacttctccaacctttaccacca
acatccctcaccaattttccaacatcaccaacctattccccaacgtcgccaaattattcc
ccatcttctcctcaatactccccaacgtctcctcattcctcacttcctccatctcctcaa
tactctccaagctcaccacaatactctcccaacgtacctacttctcctcactactcccca
agttctcctcagtattcaccaacatctcccaactactctccaacttcaccacaatattct
ccaacggaagattacagtcctgtagcaccgagatactctccgtcatctccaacttacagt
ccttcaacaccaggaggtgcttcaaatgcgtctcctcaatactctccgtcatcaccacag
tactctccatcatcccctagttacgcacctgctacccctggatactccccaggatctgct
tactcgccgtctagtcctgtctatacacccaatgcagatgaagaaaaggacaagaagaaa
aagaagtga
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integrated database retrieval system
