Xanthomonas hortorum pv. gardneri: BI317_08925
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Entry
BI317_08925 CDS
T04668
Symbol
rimO
Name
(GenBank) ribosomal protein S12 methylthiotransferase
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
xga
Xanthomonas hortorum pv. gardneri
Brite
KEGG Orthology (KO) [BR:
xga00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xga03009
]
BI317_08925 (rimO)
Enzymes [BR:
xga01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
BI317_08925 (rimO)
Ribosome biogenesis [BR:
xga03009
]
Prokaryotic type
ribosomal protein modification factors
BI317_08925 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
CLP1_P
TRAM
PrmA
Motif
Other DBs
NCBI-ProteinID:
APP84284
LinkDB
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Position
1945495..1946868
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AA seq
457 aa
AA seq
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MSQLNPKVGFVSLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTE
SLDAIGEAMNANGKVIVTGCLGKRPEQIREAYPQVLAVSGPQDYQSVMEAVHAALPPRHD
PFVDLVPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLASRPVDEVLREAERLVR
GGVKELLVVSQDTSAYGVDLKYAERPWRDRMYQTRMKALCEGLSELGVWTRLHYVYPYPH
VDDVIPLMAEGKLLPYLDIPFQHASPRILKLMKRPGAVEKTLERVQRWKAMCPEITVRST
FIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVQGASANALPDPVPEELKQERLARF
MAKQAEISAARLEAKIGSVQQCLVDVIEDDIAVARSRADAPEIDGLVHIQNGGELGLKIG
DLVDVEITDSDEHDLFGDALPANAPIQQGRSLNLQMV
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagctgaaccccaaagtcggcttcgtcagccttggctgcccgaaggcgctcgtc
gattccgaacgcatcctcacccagctgcgcgtggagggctacgacatcgtgcccagttac
gacgctgccgacgtggtggtggtcaatacctgcggcttcatcgattcggcggtgaccgag
tcgctggatgcgatcggcgaggcgatgaacgccaacggcaaggtgatcgtcaccggctgc
ctgggcaagcgcccggagcagatccgcgaggcgtatccgcaggtgctggcggtgtccggc
ccgcaggactaccagagcgtgatggaggcggtgcacgcggcattgccgccgcgccacgac
ccgttcgtggatctggtgccggactacggcatcaaactgaccccgcgccattatgcgtac
ttgaagatttccgaagggtgcaatcaccgttgcagcttttgcatcattccgtccatgcgc
ggcgatctggcctcgcgcccggtcgatgaggtactgcgcgaagcagagcgcctggtgcgc
ggcggggtcaaggagttgctggtggtctcgcaggacacctcggcctacggtgtggatctg
aagtacgccgagcggccgtggcgcgaccgcatgtatcagacccgcatgaaggcgctatgc
gaaggtttgtcggagctgggcgtgtggacgcgcctgcattacgtctatccgtacccgcac
gtggacgatgtgattccgctgatggccgaaggcaagctgctgccgtatctggacatcccg
ttccagcacgccagcccgcgcatcctcaagctgatgaagcggccgggcgcggtggagaag
acgctggagcgcgtgcagcgctggaaggcgatgtgcccggagatcaccgtgcgctcgacc
ttcatcgtcggtttcccgggcgagaccgatgccgagttcgaatcgctgctggatttcctg
gatcaggcgcagttggatcgcgtcggtgcgttcgcgtattcgccagtgcaaggcgccagc
gccaacgcgttgccggatccggtgccggaagaactcaagcaggagcggctggcgcgcttc
atggcaaagcaggcagagatttcggcggcgcggctggaagccaagatcggcagcgtgcag
caatgcctggtcgatgtgatcgaagacgatatcgcggtggcccgttcgcgcgcggacgca
ccggaaatcgatgggctggtgcatatccagaatggcggcgagcttggattgaagatcggc
gatctggtcgatgtggagatcaccgacagcgatgagcacgatttgttcggcgatgcgttg
ccggccaatgccccgattcagcaaggacgctcgttgaatctgcagatggtgtaa
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