Xiphias gladius (swordfish): 120794051
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Entry
120794051 CDS
T07311
Symbol
prdm9
Name
(RefSeq) histone-lysine N-methyltransferase PRDM9
KO
K20796
[histone H3]-lysine4 N-trimethyltransferase PRDM7/9 [EC:
2.1.1.354
]
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl00310
Lysine degradation
xgl01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
120794051 (prdm9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xgl03000
]
120794051 (prdm9)
03036 Chromosome and associated proteins [BR:
xgl03036
]
120794051 (prdm9)
Enzymes [BR:
xgl01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.354 [histone H3]-lysine4 N-trimethyltransferase
120794051 (prdm9)
Transcription factors [BR:
xgl03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
120794051 (prdm9)
Chromosome and associated proteins [BR:
xgl03036
]
Eukaryotic type
Meiosis-specific proteins
DSB formation-related proteins
120794051 (prdm9)
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
120794051 (prdm9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2
zf-C2H2_4
PRDM2_PR
zf-H2C2_2
zf-C2H2_jaz
zf-met
SET
zf-C2H2_6
zf-C2H2_11
Zn-ribbon_8
Motif
Other DBs
NCBI-GeneID:
120794051
NCBI-ProteinID:
XP_039990569
LinkDB
All DBs
Position
LG9:complement(5663423..5669459)
Genome browser
AA seq
949 aa
AA seq
DB search
MSGRSSGVEWVETTEEVVATEECPPPESNTPAVMPDLEPAETPIQKLLDTVGKGENPEAD
DGFYCEECLTLFQDQGDPANIGGPSFILDFPASVGVPQRALLTLPYGLVIGRSSIPRAGI
GVINHGPVVSPGMHFGPYEGEVTTSENAVASEFSWEIYKGKNEYEYIDAARESHSNWMRY
VNCARNEDETNLLAVQYKGSILFHCCRTIQPGDELMVWPSRKLLTHFSEAWTQTWFTKLS
SAESNRAATSQIFLCTHCQLSFTTEAYLQRHTEYFHTQPRGDCTAPAAEAAEPENPASNA
DSGHSVASVVVLSVDPLESKTCGDCGKIFKQVPHLRRHKLCVHSNKRPYCCPQCRRTFSQ
ASGLIRHQLVHRKQAVLKVPNQDIISGQKKGSSTQRSELFKPADPALTGETEGMNVSESL
QEAMDATATEDTSAGEAETSQCHCSDCGKSFTNETSLKKHKVTVHERLRPYVCTVCQKCF
GQYNDLTRHLRSHQKENKSKGEINGAPEEPNAMPFSCSECSLTFSSVDTLQQHISEHHSE
DTAAENQDDDPAPADDDQSRDPDFIPQPSVAETVGSSQKRPSQRPQRLGARSRISAITKL
IAPKRRANVCKKPSASPAQSEQGCTEPEAPAVRNGRLTKYKWFSCNCCKRTYGNPDDLKA
HKCALRQHKCGQCGATFNKSGFLKRHEQTVHAKSKKSHSCDRCDKAFTTSGNLKQHQKSN
TCMKYHCTSELFPCSFCQFSFTMKSYLIKHIKRHHPVEYLSHCDSDSLMDPLEEEEEEEE
GEKEYVCPHCGKSCASAKAFKSHTCFQQVKVLYLCTDCGKGFTNHYGLKQHQRIHTGEKP
YSCPHCSKSFSYTGQLNVHLRTHTGEKPYLCTHCGESFRQSGDLKRHERKHTGVRPYSCP
ECCKSFSRPQSLKAHQMLHLGQRMFKCTQCGKSFSRNYHLRRHHQKMHL
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcaggagcagcggcgtggagtgggttgagaccaccgaggaggtggtcgcgaca
gaggagtgcccaccaccggagagcaacacccccgcagtgatgccggatttagagccagca
gaaacaccaatccagaagttactggacaccgtggggaagggagaaaacccggaagccgat
gatggcttttattgtgaggagtgtctgactctcttccaggaccagggtgaccctgctaac
attggtggcccatctttcattcttgactttccagcaagcgtgggggtcccccagagggcc
ctcctcactcttccctatggtctggtgataggcagatctagtattcccagggcgggcatt
ggggtcataaatcatggaccagtggtgtcgccgggaatgcattttgggccttatgagggg
gaagtgacaacaagcgaaaatgccgtggcaagtgaattctcctgggagatttacaaagga
aaaaatgagtatgagtacattgatgctgccagagagtcgcactcaaactggatgaggtat
gtcaactgtgctcgtaatgaagacgagacaaatttgctggcagtccagtacaaaggcagc
atcctttttcactgctgtcgcaccatacagcccggggatgagctcatggtgtggcccagc
aggaagcttctcacccattttagcgaagcttggacccagacgtggttcacgaagttgagt
tcagcagagagtaatagagctgcaacatctcagatcttcctgtgcacccactgtcagctt
tccttcaccacagaggcgtacctccagcggcatacagaatacttccacacccagcctaga
ggggactgtacagcacctgccgctgaggcagctgaaccggaaaatcccgcctccaacgct
gactcgggtcactcggtggcgtccgtggtggtgctatccgttgatcccctcgagtccaag
acgtgcggtgactgcgggaaaattttcaagcaagtacctcacctcaggaggcacaaactt
tgcgtccactcgaacaagcgcccctactgctgcccacagtgcaggcggacttttagccag
gcatccggcttaatcagacaccagctggttcacagaaagcaggctgtgctaaaagttcct
aatcaggacataatctccggtcagaagaaagggagctcgacgcagaggtcggaacttttt
aaacctgcagatccagctttaactggtgaaacggagggaatgaatgtaagtgagagtcta
caagaagctatggatgcaaccgcaaccgaggatacctctgcaggagaggcagaaacgtcc
cagtgccattgttcagattgtggaaagagcttcacgaacgaaacctccctcaaaaagcat
aaggtgactgtccacgagaggttacgtccatacgtctgcactgtgtgtcagaagtgcttt
ggccagtacaacgacctgaccaggcacctgcggagtcaccagaaagaaaataaaagtaaa
ggagaaataaatggggctccagaggaaccgaatgccatgcccttcagctgttctgagtgt
tcactgactttttcttcagtggacacgcttcagcagcacatcagtgagcatcactccgag
gataccgctgcggaaaatcaagatgatgatccagcgcccgctgatgatgatcaaagccgt
gatcctgacttcattccacagccctcagtggccgaaacagtcgggtcgagccaaaagcgt
ccctctcagaggcctcagcgactcggagctcgatctagaatttctgccataaccaagctc
attgctccgaaacgaagggcaaacgtctgcaagaagccatcagccagccccgctcagtcc
gagcagggctgcacagaaccagaggctcccgctgtcaggaatggaaggttaacaaaatac
aaatggttcagctgtaattgctgtaaacgaacatatggaaacccggatgatctcaaagca
cataagtgcgctttgagacagcacaagtgtggtcagtgtggggcaaccttcaataagtct
ggtttcctgaaaagacacgagcagacggttcacgcgaagagcaaaaaatctcacagctgt
gaccgctgcgataaagccttcactacatctggtaaccttaagcagcatcagaagagcaac
acttgtatgaagtatcactgcacgtccgagctcttcccgtgctcgttctgtcagttctcc
ttcaccatgaagagctaccttattaaacacatcaagaggcaccaccctgtggagtaccta
tcccactgcgattcagacagcctcatggatccgctggaggaggaggaggaggaggaggag
ggggaaaaggagtatgtatgcccccactgtgggaagagctgtgcgagcgccaaagctttc
aaatctcacacgtgcttccagcaggtgaaggtcctgtacctgtgcaccgactgcgggaag
ggcttcaccaaccactacggcctgaagcagcatcagcgcattcacaccggggagaagccg
tacagctgcccccactgcagcaaaagcttctcgtacaccggccagctcaacgtgcacctc
aggacgcacactggggagaagccgtacctgtgcacccactgcggggagagcttccggcag
tcgggggacctgaagcgacatgagaggaagcacacgggggtgaggccctacagctgcccc
gaatgctgtaagagcttcagccgcccgcagagtctcaaagctcatcaaatgctccacctg
ggacagagaatgttcaaatgcacccagtgcggaaagagcttttcaagaaactatcatctc
aggagacaccatcagaagatgcacttgtaa
DBGET
integrated database retrieval system
