Xiphias gladius (swordfish): 120797709
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Entry
120797709 CDS
T07311
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03020
RNA polymerase
xgl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120797709 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
120797709 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xgl03021
]
120797709 (polr2a)
03400 DNA repair and recombination proteins [BR:
xgl03400
]
120797709 (polr2a)
Enzymes [BR:
xgl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120797709 (polr2a)
Transcription machinery [BR:
xgl03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
120797709 (polr2a)
DNA repair and recombination proteins [BR:
xgl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
120797709 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_R
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
120797709
NCBI-ProteinID:
XP_039997490
LinkDB
All DBs
Position
LG12:complement(10915366..10927877)
Genome browser
AA seq
2166 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDSN
NPKIKDILGKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEQQETEEDITKEKGHG
GCGRYQPRIRRCGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDIILGMDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAILKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVE
FQNLATVKPSHKAFEKKFKFDCTNERALRRMLQEDVVKDVLTNAHVQSSLEREFEKMKED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLNPLRVVEGVQELSKKLVI
VNGDDPLSRQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGTVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPSSPSYSPTSPKYTPTSPSYSPSSPSY
SPTSPKYTPTSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPSYSPTSPKYTPTSPSYSPSS
PSYSPTSPKYTPTSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPSYSPTSPKYTPTSPSYS
PSSPSYSPTSPKYTPTSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPSYSPTSPKYTPTSP
YSCCQF
NT seq
6501 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcacgatcaagagagttcaa
ttcggcatcatcagcccagatgagcttaaacggatgtcggttacagaagggggaatcaaa
taccctgaaacaacagaaggaggacgtcctaaactcggtggccttatggaccccagacaa
ggtgtcatagaaagaactggaagatgtcagacatgtgcaggcaacatgacagaatgtcca
ggccactttgggcatatagaactggcaaagccagttttccatgtcggcttcataacaaaa
ataatgaaggttctccgatgtgtctgctttttttgctccaagcttttagtggattcgaac
aatccaaagatcaaagacatcctgggaaaatccaaagggcagcccagaaagcgtttgaca
catgtgtacgagctgtgcaaaggaaaaaatatatgtgaaggaggggaggaaatggataac
aaatttggaatggaacagcaggagacagaggaggacattaccaaggagaagggtcacggt
ggctgtgggcgctaccagccacgtatcagacgctgtggcttggagctctatgctgagtgg
aagcacgttaatgaggattcgcaggagaagaaaatcctgctgagtcctgaacgtgtacat
gagatctttaagcgcatctcagatgaagaggacatcatcttgggcatggaccccaagttc
gcccggcctgaatggatgattgtaactgtgttgcctgtgcctccactggctgtgaggcct
gctgtagtcatgcagggatctgctcgcaaccaggatgacttgacccacaagctggctgat
attgttaagatcaacaaccaactgagaaggaacgaacagagtggtgcagcagctcatgtc
atagctgaggatgtgaagctgcttcagtttcatgtagccacgatggtggacaatgaattg
ccaggcctgccaagggcaatgcaaaaatccggccgccctctcaaatccataaaacaacga
ctaaagggaaaggaagggcgagtccgaggcaacctgatgggcaagcgtgtggacttctca
gcccgaactgtcatcaccccagaccccaacctgcaaatcgaccaagtgggcgtacctcgg
tccattgcagccaatatgaccttcccagaaattgtcaccccctttaacattgacagattg
caagagctggtgcgaagaggcaatagccagtatccaggagccaaatacatcatccgcgac
aatggagacagaattgacctgcgattccatcccaaaccaagtgaccttcatctgcagatt
ggctacaaggtggagagacacatgtgtgatggtgacatcgtcatcttcaaccgacagcct
acactacataaaatgtccatgatggggcacagggttcggattctgccctggtccacattt
cgactcaacctcagtgtcacaacaccatacaatgctgactttgacggggatgagatgaac
ctccacctgcctcagtcccttgagacaagggcagagattcaggagctggccatggtgcca
cgtatgattgttacaccccagtccaacaggcccgtcatgggtattgtgcaggacaccctc
acagctgtgcgcaaattcaccaagagggatgtcttcttagagaggggggaagtcatgaac
ctcctcatgttcctgtcaacctgggatgggaaaatgcctcaaccagccatcctcaagccc
cgtcctctgtggacaggcaagcagatcttcagtctcatcattcccggacacatcaacgtc
atccgcacacacagcactcaccctgacgatgaggacagtggtccttacaaacacatctca
cctggggacaccaaggtcatagtggagaacggtgagttgatcatgggcatcctgtgtaag
aagtctcttggaacctcagctggctccctcgtccacatctcctacctggagatgggccac
gacatcaccagactcttctactccaacattcagactgtggtcaacaactggctgctcatt
gaaggtcattccattggtattggtgactccattgctgatgccaagacataccttgacatc
cagaataccatcaagaaagccaaacaggatgtgatagaagtcattgagaaagcccacaac
aacgagctagagccaacccctggtaacacactgaggcagacctttgagaaccaggtgaat
cgtatcctcaacgatgctcgtgacaaaacaggatcctctgcccagaagtctctgtctgag
tacaacaacttcaagtccatggtggtggctggttctaagggttcaaagattaacatctca
caggttattgctgtggtggggcaacagaacgtggagggtaaacgaatcccctttggcttc
aaacaccgcacgctgcctcacttcatcaaagatgattacggtcctgagagcagaggcttt
gtggagaactcctacctggctggcctgacaccaacagagttcttctttcacgccatggga
ggcagagagggtctgattgacacagctgtcaagacagctgagactggttacatccagcgt
cgtctgatcaagtctatggagtctgtgatggtgaaatacgatggcacggtgcgtaactcc
atcaaccaggtggtccagctgcgctacggtgaggacggcctagcaggagagaacgtcgag
ttccaaaacctggcaacagtcaaaccatcgcacaaggcctttgaaaagaagttcaagttc
gattgcaccaatgagcgagcactgaggcggatgctgcaagaagacgtggtaaaggatgta
ctgaccaacgcccatgtgcagagttccctggagagggagtttgagaagatgaaggaggac
agggagattcttcgagccatttttcccactggggacagtaaggtggtgctgccatgcaac
ctggccagaatgatttggaacgcgcagaagatcttccgcatcaacactcggaccccaaca
gacctgaatcctctaagagtggtcgagggtgttcaggagttgagtaagaagctggtgatt
gtgaatggcgacgacccgctaagcagacaggcccaacagaacgccactctgctcttcaac
atccacctgcgctccacgctctgctccaaacgcatgacggaggagttccgcctttccact
gaggctttcgactggctgctgggagagattgagaccaagttcaaccagtccattgcccac
ccaggtgaaatggttggcgcgctggctgctcagtcgctgggagagccagccactcagatg
accctgaacactttccactacgccggcgtgtcggccaagaacgtaacactcggtgtgcct
cgtctcaaggaattgatcaacatctccaagaggcccaagacaccctcgctgactgttttc
ctgctgggtcaggcagcacgtgacgctgagagggccaaggacatcctctgtcgactggag
cacaccacgctgagaaaagtgacggccaacaccgccatctactacgaccccaaccctcag
aacacagtggtggctgaggatcaggagtgggtgaatgtctactacgagatgcccgacttt
gatgtgacacgcatttcaccatggctgctgcgcatcgagctcgaccgcaaacacatgact
gatcgcaagctgactatggagcagattgcagagaagatcaatgcaggttttggagacgat
ttgaactgtatcttcaatgacgacaatgccgagaagctcgttctgcgaatcagaatcatg
aacagtgatgaaaacaagttccaagaggatgaggaggtggtggacaaaatggatgatgat
gtgttcttgaggtgcatcgagtccaacatgctgacagacatgaccctacaaggcattgag
cagatcagcaaggtgtacatgcacttgccccagactgacaataagaagaagatcatcatc
acggaggacggcgagttcaaggccctgcaggagtggatccttgagacagacggagtgagt
ctcatgagagtgctcagcgagaaggatgtggatcccgtcaggaccacctccaacgacatt
gtggagatcttcacggtcttgggaattgaggctgtgcgaaaggctctggagagggagttg
taccacgtcatttccttcgacggttcctatgtcaactaccgtcacttggctctgctctgt
gacaccatgacctgccgcggtcacctgatggccatcacacgtcacggcatcaaccgtcaa
gacacgggaccacttatgaagtgttcctttgaggagacggtggatgtgttgatggaggca
tcgtcccacggtgaaagtgaccccatgaagggggtgtcggagaacatcatgcttggccag
ctcgccccggctggtacaggctgctttgacttgctgctggatgctgagaagtgtaaatac
ggcatggagatccctacaaacatacctggcatcagcgtggctggacccactggaatgttc
tttggcacagtgccgagtcccatgagtggaatgtcacccgccatgaccccgtggaacacc
ggagctacgccagcatacggtgcctggtcccccagtgttggaagcggcatgacccctgga
gcagcaggattctctcccagtgcagcatcagatgcaagtggcttctctccaggctactcc
ccggcctggtcccccactcctgggtctccaggatctccaggaccagctagcccatacatt
ccatctccaggtggagccatgtcacccaactactcacccacctccccggcctatgagcct
cgctcccctggaggctacacccctcagagccctggctattccccaacatcaccctcctac
tcccccacctctccctcttactcccccaccagcccgaactacagcccgacatcaccttcc
tactctcccacttcgcccagttactctccaacttccccttcctactcccctacgtcccct
tcctactcccctacatccccatcctactcccctacgtctccctcatattcccccacgtcc
ccctcatactcccccacgtccccctcatactctcccacctcaccaagctacagcccgaca
tcgccgagctacagcccaacgtcacccagctactctcccacctcgccttcttattctccc
acgtctccatcttactcccccacttccccctcctactcccccacctctccttcctactca
ccaaccagcccgagctacagccctacatcgccgaactacacccccacctcgcctagttac
tcccccacctccccctcctactccccaacatcgccctcttactccccaacctcccccaac
tacaccccaaccagccccaactactctcccacctccccctcatactccccgacctctccg
tcttactccccttccagtccacgctacacgccgcaatcacccacctacacacccagctca
ccctcatacagccccagctcaccctcctactcgcccacctcccccaaatacaccccgact
tcaccctcatacagcccaagctccccggagtacactccaacctctccaaagtactcccct
acctctccaaagtactccccaacgtcaccgaagtactcgcccacttctcccacctactcc
cccacaacaccaaaatacagccccacctctcctacctactcccccacctcccccacctac
acccccaccagccccaaatactcccctacctccccaacttactccccaacctcacccaag
tactcacccacgtctcctacctactcgccgaccagtcctaaaggctccacgtacagcccc
acctcccctggatacagccccacctcacccacctacagccccagctcaccctcctactcg
cccacctcccccaaatacaccccgacttcaccctcatacagccccagctcaccctcctac
tcgcccacctcccccaaatacaccccgacttcaccctcatacagccccagctcaccctcc
tactcgcccacctcccccaaatacaccccgacttcaccctcatacagccccagctcaccc
tcctactcgcccacctcccccaaatacaccccgacttcaccctcatacagccccagctca
ccctcctactcgcccacctcccccaaatacaccccgacttcaccctcatacagccccagc
tcaccctcctactcgcccacctcccccaaatacaccccgacttcaccctcatacagcccc
agctcaccctcctactcgcccacctcccccaaatacaccccgacttcaccctcatacagc
cccagctcaccctcctactcgcccacctcccccaaatacaccccgacttcaccctcatac
agccccagctcaccctcctactcgcccacctcccccaaatacaccccgacttcaccctca
tacagccccagctcaccctcctactcgcccacctcccccaaatacaccccgacttcaccc
tacagttgctgccagttttga
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integrated database retrieval system
