Xiphias gladius (swordfish): 120806305
Help
Entry
120806305 CDS
T07311
Symbol
notch1a
Name
(RefSeq) neurogenic locus notch homolog protein 1
KO
K02599
Notch 1
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
120806305 (notch1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
hEGF
EGF_CA
Ank_2
EGF_2
Ank
Notch
NOD
NODP
Ank_3
Ank_5
Ank_4
EGF_3
JAG1-like_EGF2
cEGF
Motif
Other DBs
NCBI-GeneID:
120806305
NCBI-ProteinID:
XP_040013252
LinkDB
All DBs
Position
LG20:18055735..18081398
Genome browser
AA seq
2480 aa
AA seq
DB search
MYRFFVKLTFLIPAIVTSQGLKCSLPTESCLNGGRCEATSNGNGECKCPSDYVGSRCQYP
SPCSPSPCRNGGECRPVSHGNTFDFRCMCRLGFTDRLCLTPTNHACMSSPCRNGGTCDLI
TLTAYRCRCPPGWSGKTCQLANPCASNPCANGGQCSAVDSTYICTCPPAFHGQTCKQDVN
ECAQIPSPCLNGAVCVNEVGSYHCRCPQEYTGQHCETLYMPCSPSPCQNGGTCVQKGDTN
YHCSCLPGFTGQHCEHNIDDCQGHNCQNGGVCVDGVNTYNCQCPPHYTGQYCTENVDECE
LMPNACQNGGTCHDTHGSYHCVCVNGWTGDDCSENIDDCASAACYHGATCHDRVASFFCE
CPHGRTGLLCHLDDACISNPCQKGSNCDTNPVNGKAICTCPPGYTGSACNLDIDECSLGA
NPCEHGGRCLNTKGSFQCKCLQGYEGPRCEMDVNECMSNPCHNDATCLDQIGGFHCICMP
GYEGVFCHINTDECASQPCLNNGKCIDKINSFHCECPKGFSGNLCQVDIDECASTPCKNG
AKCTDGPNKYTCECAEGYTGQHCETDINECYSDPCHYGTCKDGLASFTCYCHPGYTGRLC
ETNINECLSQPCKNGGTCQDRENTYICSCPKGTAGFNCEVNLDDCKSKPCDYGRCIDKIN
GYECACEPGYTGAMCNINIDECAINPCHNGGTCVDGINSFICLCPEGYNDATCLSQVDEC
GSNPCIHGRCQDLINGYKCTCDSGWSGPNCDINNNECESNPCMNGGTCKDMTSGYHCTCR
VGFTGPNCQTNINECASNPCLNQGTCIDDVAGYKCNCLLPYTGENCETLLAPCSPRPCKN
GGVCKESEDYQSFSCICPEGWQGQTCEIDINECVKSPCRNGAFCHNTMGGYQCKCQPGYS
GQKCEADIDDCKPNPCSNGGLCHDGINSFTCTCLPGFRGGRCEQDINECESNPCRNGANC
TDCVNSYTCTCPLGFSGINCEINTNDCTDSSCFNGGTCVDGINAFTCLCLPGFTGSYCQY
DINECDSKPCLNGGTCLDSYGTYKCTCPHGYTGVNCQNLVRWCDSSPCKNGGSCWQQGAS
YTCQCQTGWTGLYCDIPSVSCEVAAKQQGVEVGHLCRNSGQCLDAGNTHYCRCQAGYTGS
YCQEQVDECSPNPCQNGATCTDYLGGYSCECVPGYHGVNCSKEINECQSQPCQNGGTCID
LINTYKCSCPRGTQGVHCEINLDDCNPSSDPLTNEPKCFNNGKCVDRIGGYQCVCPPGYV
GERCEGDVNECLSDPCDPRGSYNCIQLTNSYRCECRTGYTGQRCDKVFDGCKGRSCRNGG
TCAVASNTPHGFICKCPPGFTGSTCEYDSRTCGSLNCRNGGTCVSGHLGPRCLCPPAFTG
PECQTPTDSLCISNPCYNGGTCQITPDAPFFQCSCPSNFNGLLCHILDYSCVGGFGRDIT
PPPEVEVSCEIPQCDEWAGNHICDSLCNNHACGWDGGDCSLNFDDPWQNCSAALQCWRYF
NDGKCDGQCNSPGCLYDGFDCQGQEGQCNPLYDQYCKDHYADGHCDQGCNNAECEWDGLD
CANNMPEKLADGHLVLVVHISPEQLKNRSSAFLRELSSVLHTNVVFRRDAKGEPMIFPYY
GSEQDLVKHNVLKRSADGWPEWASMPANVLGQVKERVSAMVSPRKRRELDPVQVKGSVVY
LEIDNRQCYQQSTECFQSATDVAAFLGALASSGNLNVPYIEAVTSVRPTPSTSELYPMYV
VFLGLAALGFICLGVLVSRKRRREHGQLWFPEGFKVSEPSKKKRREPLGEDSVGLKPMKN
LDINLMDDNQNEWGDEDPDCRRFRFEEQSMLDLSDHTDHRKWTQQHLDAADLRIPSIAPT
PPQGEIENDCMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDPSAEIISDFIYQGANL
HNQTDRTGETALHLAARYARSDAAKRLLESSADANVQDNMGRSPLHAAVAADAQGVFQIL
IRNRATDLDARMHDGTTPLILAARLAVEGMVEELINCHADANATDDSGKSALHWAAAVNN
VEAAVVLLKNGANKDMQDNKEETPLFLAAREGSYETARVLLEHFANREITDHLDQLPRDI
AQERMHHDIVRLLDEYNVVRSPGLHSAPLSTASLSPPLCSPSDYLSNLKPTLSAKKVRKI
SSGGKGGKDGGKDNRLKKKKSLDGKNNLLDTSAVLSPVDSLESPHGYLSDVASPPMTSPF
QQSPPMSLNHLQGSGDSHMGQISMGKDMGCMSFDPNPPRLSHLPVSSPSSQGTTSIGGSR
GGQCDWVSRMHPGVGQQGSFTQAPPISHNMMGPLHGVSTATLSQIMGYQNLQTSHLSSSA
HIMQQAHSRQLQHQNSNSTTAGQSLNQSFPNVELNGSDMQQNNGSGRSMPIHTVMPQETQ
ILSTQFLTPPSQHSYSGPMDNTPNHQLQVPDHPFLTPSPGSPDQWSSSSPHSNMSDWSEG
ISSPPTSIHSQMNLIPDQFK
NT seq
7443 nt
NT seq
+upstream
nt +downstream
nt
atgtatcgtttctttgtgaaactaacatttctgatccccgcaatcgtcacctcacaaggt
ctaaaatgctccctacccactgaatcatgcctgaatggaggaagatgtgaagccacctcg
aacggaaatggagaatgcaagtgtcccagtgactacgtaggcagtcggtgccagtatcca
agcccctgcagcccttcaccctgccgcaatggtggcgaatgccgcccagtttcccatggc
aacacgtttgatttccgctgcatgtgccgcctgggtttcactgaccgactatgcctgacc
cccaccaaccatgcctgcatgagctccccctgtcgcaacggtggaacatgtgatctcatc
accctgactgcctaccgctgccgctgcccacctgggtggtcaggcaaaacatgccaactt
gccaacccatgtgcttccaatccatgtgcaaatggtggccagtgctcagccgttgattcc
acctatatctgcacctgcccacctgcttttcatggtcaaacctgcaagcaagacgtcaac
gagtgcgcccagattccctctccctgtcttaatggtgccgtgtgtgtgaatgaggtgggc
tcgtaccactgccgctgtcctcaagagtataccggccaacactgtgagaccctctacatg
ccatgcagcccctcaccatgccagaatggaggcacctgcgtccagaagggagataccaac
tatcactgtagctgtctgccaggcttcacaggtcagcattgtgagcataacatcgatgac
tgtcaaggccataactgccagaatggtggtgtatgtgtagatggtgtgaacacctacaac
tgccagtgcccacctcattacacaggtcagtactgtacagaaaatgtggacgagtgtgag
ttgatgcccaatgcatgccagaacggagggacgtgccatgacactcacggcagctaccat
tgcgtctgtgtcaacgggtggacgggtgacgactgcagcgagaacattgatgactgcgcc
agtgcagcttgttaccatggtgcaacctgccacgaccgcgtagcttccttcttctgcgag
tgtcctcatggacgcacaggtttgctgtgccaccttgatgacgcctgcatcagcaacccg
tgtcaaaagggctccaactgtgataccaaccccgtcaatggcaaggcaatctgcacctgt
cccccaggttacactgggtcagcctgcaacctggacattgacgagtgttccctcggtgcc
aacccttgtgaacatggtggtcgctgcctcaacaccaaaggctctttccagtgtaagtgt
cttcaaggatatgaaggtcctcgctgtgagatggacgtcaatgaatgcatgtctaatcct
tgccataatgatgccacctgtctggaccagattggagggttccactgcatctgtatgcca
ggatatgagggtgtgttctgccacatcaacacagatgagtgtgccagccaaccttgtctc
aacaatggcaagtgcattgacaagatcaactccttccactgcgagtgccccaaaggtttt
tcggggaatctgtgtcaggtggacattgacgagtgtgccagcaccccctgcaagaatgga
gctaagtgcacagatggtcccaacaagtacacctgcgaatgtgctgagggttacacgggg
cagcactgtgagaccgacatcaatgaatgctattctgacccctgccactatggcacctgt
aaggatggcctggcctccttcacttgctactgccaccctggctacactggtcgcctgtgt
gagaccaacatcaatgagtgtctgagccagccctgcaagaatggtggtacctgccaagac
agggagaacacatatatctgttcctgccccaaaggaactgcaggtttcaattgtgaggtg
aacctggacgactgtaagagcaaaccctgtgactatgggagatgcattgacaaaatcaat
ggctatgagtgtgcatgtgagccgggctacacaggagcgatgtgtaacatcaacatcgat
gagtgtgccatcaacccctgtcacaacggcggcacatgtgttgatggaatcaacagcttc
atctgcctgtgcccagaggggtacaatgacgccacctgtttgtctcaggtggacgagtgc
ggcagcaacccctgcatccatggccgatgccaggaccttatcaatggctacaaatgtacc
tgtgactccggatggagcgggccaaactgcgacatcaataacaacgagtgcgagtccaac
ccatgcatgaacggaggaacctgcaaggacatgaccagcggttaccactgcacatgcaga
gtcggcttcactggacctaactgccaaactaacatcaacgagtgtgcctcgaacccctgc
ctcaaccagggcacctgcatcgatgatgtggctggatacaagtgcaactgtttgctgccc
tacactggggaaaactgtgagaccctgctggccccctgcagccccagaccctgtaaaaac
ggtggcgtatgtaaggagtctgaagactaccagagcttctcctgcatctgccctgaagga
tggcaaggtcaaacatgtgagatcgatatcaacgaatgtgtgaagagcccatgccgcaat
ggtgctttttgccataacactatgggtggctaccagtgcaagtgccaaccaggttactcc
ggccagaagtgtgaggcagacattgatgactgcaaaccaaatccctgcagtaatggtggt
ctgtgccacgatggcatcaacagttttacgtgtacctgtctgcctgggtttcgcgggggc
agatgtgagcaggacataaacgagtgcgagagtaacccctgtagaaatggagccaactgc
acagattgtgtcaacagctacacctgcacctgtccactgggcttcagtggcatcaactgt
gagatcaacaccaatgactgcactgacagctcttgcttcaatggtggcacttgcgtagat
ggaatcaatgcattcacctgcctgtgtctccctggattcactggcagctactgccagtac
gatatcaacgagtgtgactccaaaccgtgcctcaatggaggaacttgtcttgacagttat
gggacgtacaagtgcacctgtcctcacggctacacaggagtcaactgtcagaatcttgtg
cgctggtgcgactcttccccctgtaaaaatggaggctcgtgttggcaacaaggagcctcc
tatacctgccagtgccagactggatggactggtctatattgtgacatccccagtgtgtcc
tgcgaggtagcagccaaacagcaaggtgtggaggtgggtcacctgtgcaggaactcaggc
cagtgtctggatgctggaaacacacattactgccgctgccaggccggctacaccgggagt
tactgccaggagcaagtagatgagtgctcacccaatccttgccagaatggagccacctgt
actgattatttaggaggctatagttgtgagtgtgtccctggctaccatggtgtaaattgc
tccaaagagatcaatgaatgtcaatctcagccctgccagaatggaggcacctgcatcgac
ctcatcaacacatacaagtgctcctgtcccaggggaacacaaggtgtccactgtgaaatt
aatttggatgactgcaacccttccagtgacccgctgaccaacgagcctaagtgcttcaac
aatggcaagtgcgtggatcgcattggaggttaccagtgtgtgtgcccaccgggttatgta
ggcgagcgctgtgaaggtgatgtcaacgagtgtttgtcagacccctgtgaccccagaggg
tcttacaactgcattcagctcaccaacagctaccgctgcgaatgccgcaccggatatact
ggtcagcgttgtgataaagtgtttgacggctgtaaaggaagatcctgcagaaatggaggg
acgtgtgctgttgccagtaacacacctcatggtttcatctgcaaatgtccacctggcttc
accggctctacttgtgagtatgattctcgcacctgtgggagtctgaattgcaggaatggg
ggcacgtgtgtgtcaggacacctaggcccacgctgcctgtgtccaccagccttcactgga
cccgagtgccagacccccacagacagcctctgcatctccaacccctgctacaacggtgga
acgtgccagatcaccccagatgcgcctttcttccagtgcagctgccccagcaatttcaac
ggcctgctgtgccacatcctggactattcctgtgtcggaggttttggtcgagacatcacc
ccacctccggaagtggaggtgagctgtgagattcctcagtgtgacgagtgggcgggcaac
cacatctgtgattcgctgtgcaacaatcacgcttgcggttgggatggaggagactgctcg
ctgaattttgatgatccttggcaaaactgctctgctgctctgcagtgctggcgatacttc
aacgatgggaaatgtgatggccagtgcaacagccctgggtgcctttacgatggctttgat
tgccaaggacaggaaggtcaatgcaacccactgtatgaccagtactgtaaagaccactac
gctgacggtcactgtgaccagggctgcaacaatgcagaatgtgaatgggatggcttggac
tgtgctaacaacatgccagagaagctggcagatgggcacttagttctggtggttcacatt
tccccagaacaacttaaaaatcgttcttcagccttcctcagagagctcagcagtgtcctc
cacaccaacgtggtgttccgtcgtgatgccaagggagaaccgatgatcttcccttactat
ggcagcgaacaggatctggttaaacataacgtgctgaagcgctccgcagatggctggccc
gagtgggcctcgatgccagccaatgttttgggtcaggtgaaggagcgtgtgtctgccatg
gtcagcccacggaaacgcagagagctggatcctgtgcaagtcaaagggtctgtggtatac
ctagagattgacaaccgtcagtgttaccagcagtctactgaatgtttccagagcgccaca
gatgtagctgcattcctcggagcactggcctccagtgggaatctaaatgttccctacatt
gaagctgtcacaagtgtgagacccactccctccacttcagagctctaccccatgtatgtg
gtcttcctgggtttggctgctttgggtttcatctgcctgggtgttctggtatctcgtaag
cggcgacgagagcacggccagctctggtttccagaaggattcaaagtgtcggagcccagc
aaaaagaaacgcagagagccgttgggagaggattctgttggactgaagcccatgaaaaat
ttggacatcaatcttatggatgacaatcaaaatgaatggggtgatgaggatccagactgc
agacgcttcaggtttgaggagcaatctatgttggatttgagtgaccatactgaccataga
aaatggacacagcagcaccttgacgcggctgacctacgtattccatccattgctcctacg
cctcctcagggagagatagagaatgactgcatggatgtcaatgtccgaggaccagatggt
ttcactcccctgatgatcgcctcctgcagcggtggaggactggaaactggtaacagtgaa
gaggaagaagatccctcagcagaaatcatttccgactttatttaccagggcgccaacctc
cacaaccagactgaccgcacgggtgagactgccctccacctggctgctcggtacgcccgc
tcagatgctgccaaacgtctcctggagtccagcgccgatgccaacgttcaagacaacatg
ggccgcagtccgcttcatgctgctgtggctgcagatgcacagggagtgttccagattttg
atccgaaaccgtgccactgatcttgatgcccgcatgcatgatggaacaacaccactgatt
ctggctgcccggctggcggttgaaggcatggtggaagaacttatcaactgccacgctgat
gctaatgccacagatgattctggtaaatctgctcttcactgggccgcggctgtaaacaat
gtagaggccgccgtggtgctgctgaaaaatggtgccaacaaagacatgcaagacaacaag
gaagagacgccactcttccttgcagctcgtgaaggcagctacgagacagcaagggttctt
ctggagcattttgcaaatcgtgagatcactgaccatctcgaccagctgccccgagatatc
gcccaggaacgcatgcatcacgacatcgtacgcctcctggatgagtacaatgtggttagg
agtcctgggcttcacagcgcccccctaagcaccgctagcctctctccacctctctgctca
cccagtgactaccttagcaacctcaagcctaccctttcagcaaagaaggttcgcaaaatt
agctctgggggaaaaggagggaaggatgggggcaaagataatagattgaagaagaaaaag
tctcttgatgggaagaataatttgctggacacatcagctgtcctttccccagttgattcc
cttgagtcaccacatggctacctgtcagatgtggcctctcctcccatgacgtcacccttc
cagcagtccccacctatgtctctaaatcacctacaaggcagtggggactcccatatgggc
cagatcagcatgggaaaggatatgggctgtatgtcttttgaccccaacccaccccgtctc
tctcacctgcctgtgtccagtccaagtagtcagggtacaacatccataggtggaagcaga
ggcggccagtgtgactgggtctctaggatgcacccaggtgtaggccagcaaggaagcttc
acgcaggcgccacccatatcccataacatgatgggaccactgcatggcgtcagcactgcc
actctatctcagatcatgggctaccagaatctgcagaccagccacctcagctcgtctgcc
cacataatgcagcaggctcactcgcggcagctccagcaccagaactccaactccaccact
gccggccagtccctcaaccagagtttccccaacgtcgagctgaatggctccgatatgcag
caaaacaacggctcgggccgctctatgcccatccacactgtaatgccgcaggagacacag
atcctgagcacccagtttctcaccccaccctcccagcacagctattctggccctatggac
aacacacctaaccaccagctacaggtccctgaccacccctttctaactccctcccctggc
tcccccgaccagtggtccagctcatccccacattccaacatgtccgattggtccgagggc
atctctagcccacctacaagtatccattcgcaaatgaatctgatcccagaccagtttaag
tag
DBGET
integrated database retrieval system
