Xiphophorus hellerii (green swordtail): 116707746
Help
Entry
116707746 CDS
T07363
Symbol
brip1
Name
(RefSeq) Fanconi anemia group J protein isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03440
Homologous recombination
xhe03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
116707746 (brip1)
03460 Fanconi anemia pathway
116707746 (brip1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xhe03400
]
116707746 (brip1)
Enzymes [BR:
xhe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
116707746 (brip1)
DNA repair and recombination proteins [BR:
xhe03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
116707746 (brip1)
FA (Fanconi anemia) pathway
Downstream FA components
116707746 (brip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
DEAD
Motif
Other DBs
NCBI-GeneID:
116707746
NCBI-ProteinID:
XP_032401150
LinkDB
All DBs
Position
18:complement(33065179..33111791)
Genome browser
AA seq
1188 aa
AA seq
DB search
MASPVEYTIGGVKVHFPCKAYPSQLAMMNSIIRGLNYGQHCLLESPTGSGKSLALLCSAL
GWQQAQMAKVKEGGGHPGDRSQSDKDVGDCKKSEPPSPCPCVCHREAAQSAVVDLTESPC
KETAQPSHTASEDVPLPGESQAKSPSLASRLSEKVQASLDPDFNKDEDFRPDRKRIRTAE
YKSHKRQRTQQGVIFIDDEPDLESETSGPQSWKTASTHQAAGLSSSCSSSEPCSRCPCAS
VKDNLKNKDKDKDGSKKIPKIFFGTRTHKQITQIAHELKRTVYSGVHMTILSSRDHTCVN
PDVAPHFNRNERCKDLLEAKDGRSCRFYHGVQKMRDQHTLQWVHGLREAWDIEDLVSLGK
RLRSCSYYAARELMQDASIIFCPYNYLLDPMIRESMEIDLEGQILVLDEAHNIEDCARES
ASYTLELSSLQTTKAELDGMVHSNIRRSKHESLRNFCYALINWIQESQVLLSERGFESAC
KVWSGNDILTVFHSLGVTFDTFCNMKQNLASVLEKEERVGLVNGKEDMVQVPIISASTAT
VLKNLFMVLDFLYRDSCRFAEDYRIALQRSYAWTNQVPPDVPDAQGFLVRPRHRNRQNAR
VKTEVLTLSFWCLNPAVAFSDLSGSVRSIVLTSGTLSPMGSFSSELGVKFTIQLEANHVI
NKSQVWVGTVGAGPQGRKLCATFQHAETFAFQDEVGDLLLHVCRVMVKGVLCFLPSYKML
DKLKDRWVNTGLWEKLEQEKTVITEPRGGGKGDFDELLQMYYDAIKTCEGRDGALLIAVC
RGKVSEGLDFTDDNARAVVTIGIPFPNIKDLQVELKMKYNDQHCKSRGLLPGHRWYEIQA
YRALNQALGRCIRHRNDWGALILVDDRYKNNPNKYIAGLSKWVRQLVQHHDTFSNAMQSL
KAFSEVQQNVEVAPVNNPTLNVSDLSNSSPLSVSAQSFNGEPEPRRTNSCNKPPYSQQNT
ITQLKTEHSNTAEPLKALRSAPAKQLSAQHLYHIFTINPTNTNLKTPIFKAKPANCSVRP
GALQISSPPMNLETLRTNQTDGNCLSENTEAPGVSTITTPPGFKSESPVPAKSSDDDEDK
SVFYTPELFEDEGNPPKENHVSSPRVDPGTERSATPSQDLATAFGEQSVVSVSKQSTELS
QGQKEDTEALQQSEKTEENESQSRQRGSRLHRLSRSRQRVSLSQTGNQ
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atggcctctcctgtggagtacaccatcgggggagtgaaggtccacttcccctgcaaggcg
tatccatcccagctagccatgatgaattctatcataagagggttgaactatggacagcac
tgtttgttggagagccccacgggcagcggtaaaagtctggccttgctctgctctgccctg
ggctggcagcaggctcagatggctaaagtgaaagaaggaggaggtcatcctggagacaga
agccagtcagataaagatgtgggcgactgcaagaagtcagaacctcccagcccgtgtccc
tgtgtgtgccacagagaagcagcccagtctgctgtggtggacctcactgagtcaccctgc
aaagagacggcccagccatcgcacacagcatcagaagacgtgccactaccaggtgagtct
caagctaaaagcccgtctttagcatcccgtctgtcggagaaagtccaggcctctctagac
cccgacttcaataaagatgaggacttcagaccagacaggaagcgcatccgtactgcagag
tacaagagccataaaaggcagcgcacacaacaaggcgtcatattcattgatgatgaacct
gatttggagagtgaaacatctggtcctcagagctggaaaactgcctcaacccaccaggca
gccggtttgtcctcatcatgcagttcctccgaaccctgctcccgctgcccgtgtgcatca
gtcaaagacaacttgaagaacaaggacaaagacaaagatggcagcaagaagattccaaag
attttttttggcacacgaacccataagcagataactcagattgctcatgagctgaagcgc
accgtttattccggagtgcacatgactatcctttccagcagagatcacacctgtgtcaac
ccagacgtggcgccgcatttcaaccgcaacgaacgctgcaaggatctgctggaggccaaa
gatggaaggtcatgcaggttctaccatggtgtgcagaagatgcgggaccagcacaccctg
cagtgggtccatggactgcgtgaagcctgggacatcgaagacctggtgtctctggggaaa
aggctccgatcctgctcttactatgctgctcgggaacttatgcaggatgcctctatcatc
ttttgtccgtataactacttgctggatccaatgatcagagagagtatggaaattgacctg
gaagggcagatcttggtgctggatgaggcccataacatagaagactgtgcaagggaaagc
gccagctacaccttagagctcagcagcctgcagacgaccaaagctgaactggacggcatg
gtccacagtaacattagacgctccaagcacgagtctctcaggaacttctgctacgccctg
atcaactggattcaagagagccaggtgctgctgtctgaacgagggtttgagagtgcctgc
aaagtctggagtggaaacgatatactgaccgttttccacagcttgggtgtcacatttgac
accttctgtaatatgaagcaaaacctggcatctgtgttggagaaggaggaacgtgtcggt
ttggttaacggcaaggaggacatggtgcaggtcccaattatcagcgcatctacagcaact
gtcctgaaaaacctcttcatggtgttggattttctctacagggacagctgccggtttgct
gaggactaccgcattgcattgcagaggagctacgcctggaccaatcaggtcccgcctgac
gttcctgatgcccagggctttttggtccggcctcgccaccgaaaccgtcaaaatgcacgg
gtcaaaacggaagttctcacgctgagtttctggtgtctcaaccctgctgtggctttctct
gacctgagtgggtcagtgcgcagtatcgtgctgacatcaggaacactgtcccctatgggc
tccttctcctctgaacttggggtaaaattcaccatccagttagaagccaaccatgtgatc
aacaaatcccaggtgtgggtgggcactgttggtgcaggaccccaaggccgaaaactctgc
gccacctttcagcacgctgaaacatttgccttccaggatgaggtgggggatttgctgctt
catgtctgccgagtcatggtcaaaggcgtgctctgctttctgccttcctacaagatgctg
gacaagctgaaagaccgttgggtcaacactggtctgtgggagaagctggaacaagagaaa
accgtcatcacagagccccgcggtggtgggaagggggactttgacgagctacttcagatg
tactacgatgccataaaaacttgtgaaggtagagacggtgcactacttattgctgtatgc
aggggtaaggtcagtgaaggcctagacttcacagatgacaatgccagagcagtagtgacc
attggaattccttttccaaacatcaaagacctccaggtggaactaaagatgaagtacaat
gaccagcactgcaagtcgagaggtctccttccaggccatcgctggtatgagatccaggcc
tacagagctctaaaccaggcgctggggagatgcatccggcacagaaatgactggggtgcc
ctgattctggtggatgaccgatacaagaacaatcctaataaatacattgcaggtttgtct
aaatgggtccgccagcttgtccagcatcacgacaccttcagcaatgctatgcagtccctg
aaagctttctctgaggtgcaacagaatgtggaggtggcccctgtgaacaacccgacgctc
aacgtttctgatttgtctaacagtagtcccttgtctgtgtcggctcagagttttaatgga
gaaccagaacctcggagaaccaattcatgtaacaaacccccttattcccagcagaacaca
atcacacagctgaaaactgaacacagtaacacagcagagccactgaaggcactgcgaagt
gctccagctaagcaactctcagcccagcatttgtatcacattttcaccatcaaccctaca
aacaccaaccttaagacgcccatctttaaagcgaaaccagcgaactgctccgtccggcct
ggggccctgcagatctcttctccaccaatgaatctggaaacattgcgcactaaccaaacg
gatggaaactgtctcagtgaaaacactgaggctccgggggtgtccacaataaccacccct
cccggctttaaaagtgaatcaccagtaccagcaaagtcttctgatgatgacgaggacaag
agtgttttctatactccggaactttttgaggatgaaggaaacccgccgaaagagaaccat
gtgtcctctcccagagttgatcctggcacagagagatcagccactccatctcaggattta
gccactgcatttggtgaacagagtgttgtttcagtcagtaagcaaagcacagagctatca
cagggccagaaagaggacacggaggcactgcagcaaagtgagaaaacagaggagaatgag
agccagagcagacagagaggaagtagacttcacaggctgtccaggtccagacagagagtt
tccctcagtcagacaggtaaccaatag
DBGET
integrated database retrieval system
