Xiphophorus hellerii (green swordtail): 116713158
Help
Entry
116713158 CDS
T07363
Symbol
trmt2b
Name
(RefSeq) tRNA (uracil(54)-C(5))-methyltransferase homolog isoform X1
KO
K15331
tRNA (uracil-5-)-methyltransferase [EC:
2.1.1.35
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xhe03016
]
116713158 (trmt2b)
Enzymes [BR:
xhe01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.35 tRNA (uracil54-C5)-methyltransferase
116713158 (trmt2b)
Transfer RNA biogenesis [BR:
xhe03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
116713158 (trmt2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
PrmA
Methyltransf_25
MTS
Ubie_methyltran
Methyltransf_15
Methyltransf_4
Cons_hypoth95
AviRa
Methyltransf_23
Methyltransf_11
Methyltransf_32
Motif
Other DBs
NCBI-GeneID:
116713158
NCBI-ProteinID:
XP_032409061
LinkDB
All DBs
Position
22:complement(16521287..16524802)
Genome browser
AA seq
491 aa
AA seq
DB search
MSLTAKCCRSVMAFRPNIFYPRRSCVLFSTSVSPADEGTAGSGSQKRRRRRQKKAAWTDD
LSWEERLADAVTPLWRLSYEEQLELKQNNHRRILSELSGSLSPDPRSGLPAPASAKLNFP
VLPVLPSPVRDGYRNKSTFSVNRGVDGNPKTVGFYLGTASRGNIVCVNGDHLLNMPEKHT
LVARCYQDFIRQSSLEPCLLFHTGGHWREVTVRTNAQGHTMAIVYFHPQMMTAEEMAVHK
AELVEYFSRGPGSACQLDSLFFQESTMTRCTHEESPYQLLHGQPYLYEEVLGFKFRISAD
AFFQVNQAAAQVLYNTVRDLCVPGAAQSKTGSTLLDVCCGTGAIGIISSPRVDRVIGVEI
IEQAVRDAAHNAALNNVENCEFLPGKAEVVLPALMSQLSSAPGVLTAVVNPSRAGLHPKV
VRALRNQEAIRRLVYVSCKPDGEAMRNFKELCCAPNQEKKLTGDAFSPTLAVPVDMFPHT
PHCELVLLFER
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgtctttaaccgcgaaatgctgcaggtcagtcatggctttcagaccaaatatattttat
ccgaggagatcctgcgtgctgttttcaactagcgttagtccggctgacgaagggacagcg
gggtcggggtcgcagaaacgacggagaagacggcagaagaaagcggcctggaccgacgac
ctgtcctgggaggagaggctggccgatgcggtcactcctctctggaggctgagctatgag
gagcagctggagctcaagcagaacaatcatcggaggatcctgtctgaactctcaggatct
ctttcacctgatcccaggtcaggtttaccagcacctgcctcagctaaactcaacttccct
gtcctgcctgttctgccctccccagtcagggatggctaccgcaacaaatccacgttttca
gtcaacagaggagtggatgggaatccaaaaacagttggattttacctagggacggccagt
cggggaaacattgtctgtgtgaacggagatcacctgctcaacatgccggagaagcacaca
ctagtagccagatgttaccaggacttcatccgccagtcctctctggagccctgcctgctg
ttccacaccgggggtcactggagagaggtcaccgtgaggaccaatgcgcagggacacacc
atggctatagtgtatttccacccacagatgatgaccgcagaagaaatggctgttcataag
gctgagctggtggagtatttctcaaggggtcctgggtcagcctgtcagctagactccctg
ttcttccaggaaagcaccatgactcgctgcacgcatgaggaatccccgtaccagctgctg
cacggtcagccatatttgtatgaggaggtcctgggcttcaagttccgcatatctgccgat
gctttcttccaggtgaaccaggcagctgctcaggtgctgtataacacggtcagagacctg
tgtgtcccaggagcagcacagtcaaaaacaggaagtactctgctcgacgtgtgctgcggc
acaggcgccatcggcattatctcttctcccagagtggacagggttatcggtgttgagatc
atagagcaggcggtgagagatgccgcacacaacgccgctctcaataacgtagaaaactgt
gagtttctccctggtaaagcggaggtggtgctccctgctctcatgtctcagttgagctct
gcacccggagtccttaccgctgtggtgaatccgtctcgagcgggcctccatcccaaagta
gtcagagcgctgagaaaccaagaggctatccgcagactggtctatgtgtcctgtaagccg
gacggagaggcgatgaggaacttcaaggagctttgctgtgctcctaatcaagaaaagaag
ctcacaggagacgctttttctcccactctggctgtccctgtggacatgttcccacatact
cctcattgtgaactggtgcttctgtttgagaggtag
DBGET
integrated database retrieval system
