Xiphophorus hellerii (green swordtail): 116714775
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Entry
116714775 CDS
T07363
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116714775 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116714775 (clp1)
Enzymes [BR:
xhe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
116714775 (clp1)
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
116714775 (clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
ATP_bind_1
MMR_HSR1
AAA_22
TniB
nSTAND3
CbiA
AAA_16
Motif
Other DBs
NCBI-GeneID:
116714775
NCBI-ProteinID:
XP_032411407
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All DBs
Position
23:complement(15850473..15853787)
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AA seq
441 aa
AA seq
DB search
MAAEGVEKTSEDASSSGKVCTRFDLEKETELRFEVEAGEAADQVEMELLTGMAEVFGSEL
NRNKKYTFGPGSKIAVFTWQGCSVNLYGKPEVAYVSKDTPMLLYLNTHAALEQMRKQAER
ENERGPRVMVVGPTDVGKSTVCRMLLSYAVRVGRRPTLVELDVGQSGVSVPGTVSALCIE
RPADVEEGFSVQAPLVYHFGSTTPGTNIKLYNKLTSCLAEVFSQRCEVNRKASVGGCIIN
TCGWVKGSGYQALVHCASTFQVDVVLVLDHERLYNELKRDLPHFVRVVLLPKSGGVVERS
KECRRETRDEKIREYFYGFRGLSFFPFSYEVRFSDVRIYKIGAPSIPDSCLPLGMSQDDT
QLKLVPVTPGRDLTYHMLSVSSVDDGDEDARKSIVESPVCGFIVVTNVDTQAQVMKVLSP
APRPLPRHTLLIMDIRFMDMK
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagagggtgtggaaaagaccagtgaagatgcatcttcttcggggaaggtgtgc
accaggttcgacctggagaaggagaccgagcttcgcttcgaggtggaggccggagaggcc
gcggatcaggtggagatggagctcctgacggggatggctgaggtctttggctctgagctg
aaccgcaacaagaaatacactttcggaccaggctccaagatcgcagttttcacttggcag
ggctgcagtgtgaatctgtatggaaagccagaggtggcctatgtgtccaaggatactcct
atgctgctctacctgaacacccatgctgccctggaacagatgaggaaacaagctgagcgg
gaaaatgagagggggcccagagtgatggtagtgggacctacagacgtggggaagtccaca
gtgtgccggatgcttctgagctatgctgtgagagttggaaggagacctacgctggtggaa
ctggatgttggacagagtggggtttctgttccagggacagtatcagctctgtgcatcgag
cgtcctgcagacgtggaggagggcttctctgtccaggctcctttagtttatcactttggt
tctacgactcctggaaccaacatcaaactttacaacaagctgacatcgtgcctggccgaa
gtgttttctcaacgctgtgaggtaaacaggaaggccagcgttggcggctgcatcatcaac
acctgtggctgggtgaagggttctgggtaccaggctctggtccactgtgcctccaccttc
caggtggatgtggtgcttgtgctggaccatgagaggctctacaatgaactcaaacgggac
ctgccgcactttgtacgtgttgtgctgctgccgaagtccggaggagtggtggaacgctcc
aaggagtgccggcgggagactcgggatgaaaagatccgcgagtacttctatggcttccgc
gggctgtccttcttccctttctcttatgaagtgcgattctcggatgttcgcatctacaag
ataggggcgccgtccatcccagactcctgcctgccactgggaatgtctcaggacgacacg
cagctgaaactggtgccggtaactccagggagggacctgacgtatcacatgctgagtgtg
agcagcgtcgatgacggagacgaagacgccaggaagagcattgtggagagccccgtctgc
ggattcattgtggtcacaaacgttgacactcaggcacaggtgatgaaagtgctgtcacct
gcacccagaccactgcccagacacacgctgctcatcatggacattcgctttatggacatg
aaatga
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