Xiphophorus hellerii (green swordtail): 116725442
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Entry
116725442 CDS
T07363
Name
(RefSeq) vascular cell adhesion protein 1-like
KO
K06527
vascular cell adhesion molecule 1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
116725442
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
xhe04090
]
116725442
04091 Lectins [BR:
xhe04091
]
116725442
CD molecules [BR:
xhe04090
]
Proteins
116725442
Lectins [BR:
xhe04091
]
I-type lectins (Siglecs)
116725442
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
Ig_2
I-set
ig
V-set
C2-set_2
C1-set
Ig_5
ICAM1_3_5_D2
Ig_4
Ig_C17orf99
ICAM_N
Lep_receptor_Ig
Motif
Other DBs
NCBI-GeneID:
116725442
NCBI-ProteinID:
XP_032427388
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Position
9:complement(32789312..32804864)
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AA seq
883 aa
AA seq
DB search
MKTCCPSVQQRAQWPPAYKGCRSEGGVSVGASCVELIFCFRLRDRSTKETLLLLRPSIRP
SSRPSIHPFIQPSIQLSSRMDGCLQLLSVVLLMSSWCVQGLRVSLSPRRPLLRLGSHQHM
VCQVHDCPTEPSITWATVNDRPLGASISANRTHSTLTFDPVKIEDEGQLTCKARCGDGRA
ESRASVGVYSFPSDPEIAGQDRLRDRVEATLTCRVPNLYPAGDLNLTWVRGDTVLKSTRG
SGSSSVRFLPLREDSGGSITCRATLELPGLPSDYRTRETTTTLNVRYAPGLMNISDPVAV
MSGSPLTLSCSAEGNPEPTITWTAGGRPLPGGRGGQLILSAVKLSDAGRYECETRNSEGN
QTADVNVTVLAPPTSTSLSVDPGEEVVEGQQVNFTCSSEGAPPPSLVLRRKGEELLRTDS
TPLLSFSLPSVSLEDSAHYECEASNQYGSQQESRSITVSAHPLQLYSSPQVSAERGSALI
LTCNASGCLHPPAFSWRRTDRNRTLLQRTEPQDGQSHLHLLNLDLRHQGGYSCEAECDSV
IRTREIHVQVYSFPSDPVLEDPGPVQLGQEVQLRCDVTDIFSANQLRFRWLSGNRTLMAE
MHRFSGSLQNVSSILQLKAEEAARVVTCSVELLTADRDVWRSRGTSIPLQIHYPPRSTVL
SVCPGEEVLEGQRVTLTCRSDGAPPPAVVLRRNGEELLRSDANSSSSLSLSISSTLLEES
GLYQCEASNQYGSQLVSNFITVKAPPRNTTVHIFPSTEVQEGQNVTVCCQTISFPPPAVI
LKKLSNGTELFSTSGTFLLVNVTSSDSGLYQVNVSNDLGSEVRVFSIRVREVRTGFPPGL
SIILISAAGVAAGLTASALILDYMRRSRKKGFYQLPQSAPPSA
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacctgttgtccttccgtccagcagagggcgcagtggcctcctgcatataaaggc
tgccgatcagaggggggcgtttctgtgggggcttcatgtgtcgagctcattttctgcttc
agactcagagacaggagcacaaaggagacgctgctgctgctgcgtccatccatccgtcca
tccagccgtccatccatccatccgttcatccaaccgtccatccagctgtccagcaggatg
gacggctgccttcagctcctctcagtcgtgctgctgatgtcatcgtggtgcgttcagggc
ctccgggtcagcctgtcgcccaggcggcctctgctccggctcggctcccaccagcacatg
gtctgccaggtccacgactgtcccacagaaccgagcattacctgggccaccgtcaacgac
cgacccctgggggcgtccatcagcgccaacagaacccactccactctgacctttgacccc
gttaagatagaagacgaagggcagctgacgtgtaaggccagatgtggagatggacgggcg
gagagccgagcctccgtcggtgtttactcgttcccctcggaccctgagatcgccgggcag
gaccgcctcagagaccgcgtggaggcgaccctcacctgccgggtgcccaacctgtacccc
gccggggacctgaacctcacctgggtccgaggagacacggttctgaagagcaccagaggg
tctgggtccagctccgtccgcttcctgcccctcagggaggattcgggagggagcatcacc
tgcagggcgacgctggagctgccgggtctgccgtcggactacaggaccagagagaccacc
acaaccctgaatgtccgctatgctccaggcctcatgaacatctctgacccggtggcggtg
atgtccggctcgccgctaactctcagctgttctgctgagggaaaccccgagccgaccatc
acctggacggcaggcggtcgccctctgcccggaggtcgcggaggtcagctcatcctatcg
gcggtgaagctttccgacgccggacggtacgagtgtgaaaccagaaactcagaaggaaac
cagactgcagatgtaaacgtcacagttttagctccgcccaccagcacctccctctcagtg
gatccaggtgaggaggtggtggagggccagcaggtgaatttcacctgcagctctgaagga
gctccgcctcccagcctggtcctgaggagaaaaggggaggaacttctgaggactgactcc
acccccctgctcagcttcagccttccctccgtgtccctggaagactccgcccactacgag
tgtgaagcctccaaccagtatggctcccagcaggagtccaggtctatcactgtgagcgct
cacccgctgcagctgtattccagtcctcaggtgtcagcggagcgcggctcggctctgatc
ctcacctgtaacgcctctggctgcctccacccgcctgccttcagctggaggaggacggac
cggaaccggaccctcctccagaggacggagccgcaggatggccagtcccacctccacctg
ctgaaccttgacctccggcatcagggaggctacagctgtgaggccgagtgcgactcggtc
atcaggaccagagagatccacgtccaggtctactcgttcccatctgaccctgttctggag
gatcccggtccggtccagctgggccaggaggtccagctgcgctgtgatgtcaccgacatc
ttctcggccaatcagctgcggttccgctggctgtcggggaaccggactctcatggcggag
atgcacaggttctccggctccctgcagaacgtctcgtccatcctgcagctgaaggcggag
gaggcggcgcgggtcgtgacctgcagcgtggagctgctgacggcggaccgagacgtctgg
aggtccagaggaaccagcatccctctgcagatccactatcctccgaggtcgaccgtcctg
tccgtctgtccaggtgaggaggtgctggagggccagcgggtgacgctgacctgccgttcg
gacggcgctccgccccccgccgtggtgctgaggagaaatggggaggagcttctgaggagc
gacgccaactcctcttcctcgctttccctcagcatctcctccaccctgctggaggagtcg
ggcctctaccagtgtgaagcctccaaccagtacggctcccagttggtctccaatttcatc
accgtcaaagctcccccgaggaacactaccgtccacatctttccttctacggaagtccag
gagggccaaaatgtgactgtgtgctgccaaaccatcagcttccctccaccggcggtgatc
ctgaagaagctgagcaacgggacggagctgttctccaccagcggcaccttcctgttggtc
aacgtcacttccagcgactcgggcttgtaccaggtcaacgtcagcaacgacctgggctcc
gaggtcagagtcttcagcatcagagtcagagaggtcagaaccggatttcctcccggtttg
agcatcatcctcatctcagccgccggcgtcgccgccgggctgacggcctccgctctgatc
ctcgactacatgaggagatccaggaagaaaggcttctaccagctgccgcagtccgcgccg
ccgtcagcctga
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