Xiphophorus hellerii (green swordtail): 116729714
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Entry
116729714 CDS
T07363
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1-like isoform X1
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04020
Calcium signaling pathway
xhe04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
116729714
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
116729714
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xhe04040
]
116729714
Ion channels [BR:
xhe04040
]
Ligand-gated channels
Glutamate (ionotropic)
116729714
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Gene cluster
GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
Peripla_BP_6
DUF6724
Cas_APE2256
DUF3663
Motif
Other DBs
NCBI-GeneID:
116729714
NCBI-ProteinID:
XP_032434298
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Position
12:427778..483044
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AA seq
886 aa
AA seq
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MAARSVLLLAALHCCSVALCGCEPRQVNVGAVLSQKRYEQVFKDAVTQANDLYGKDKFKM
NAISVTHKPNAIQMALSVCEDLISNQVYAILVSHPPQSNDHLTPTPVSYTAGFYRIPVVG
LTTRMSIYSDKSIHLSFLRTVPPYSHQAQVWFDLMREFRWNHIILIVSDDHEGRAAQKKL
ETLLEERETKTKNRNYENLDQQNFDFRRTPKAEKVLLFSQDTNLTALLLEAKDLEARVII
LSASEDEAMAVYKAARQLNMTGSGYVWLVGEREMSGKALSEAPDGLLGLQLINGKNESAH
ITDAVAVVAQSLQELFEKENITEPPRGCVGNTNIWRTGPLFKRVLMASKYPDGLTGRIEF
NDDGDRRFATYSILNHQKAGRVIQVGVFNGTQVVMNPQRKIIWPGGETEKPVGYQMSTRL
KIVTIHQEPFVYVKPTQSDGTCKQEHTVNGVVIKKVICTGPNGTIPGQPIVPQCCYGFCI
DLLIKLAMSMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLGGLADMIVAPLTIN
NERAQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLL
DRFSPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFA
MIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELS
TMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGI
GMRKDSPWKQNVSLAILSSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLV
AGGIVAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQETR
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atggcggctcgcagcgtgctgctgctggccgcgctgcactgctgctcggtggcgctgtgc
ggctgcgagccgcgccaggtgaacgtgggcgccgtgctgagccagaagcgctatgaacag
gtgttcaaggacgccgtgacgcaggccaacgacctctacggcaaggacaagttcaagatg
aacgcaatctccgtcacgcacaagcccaacgccatccagatggcgctgtccgtctgcgag
gacctcatctccaaccaggtgtacgctatcctggtcagccatcctccgcagtccaacgat
cacctgactcctacgcccgtctcttacacggccgggttctaccggatcccggtggtcggc
ctgacgactcgcatgtccatctactccgacaagagcatccacctgtccttcctgcggacg
gtgccgccgtactcccaccaggcccaggtgtggttcgacctgatgagggagttcaggtgg
aaccacatcatcctgatcgtcagcgacgatcacgagggccgagccgcccagaagaagctg
gagacgctcctggaggagcgggagaccaagactaaaaacaggaactatgaaaacctcgac
caacagaactttgacttcaggagaacacccaaggcggagaaggtgctgctgttcagccag
gacaccaacctgacggcgctgctgctggaggccaaggacctggaggcccgagtcatcatc
ctgtcggccagtgaggatgaagccatggccgtgtacaaagcggcccgtcagctcaacatg
accggttctggctacgtctggctggtcggagagcgggagatgagcgggaaagctctgagc
gaagctcctgatggcttgctgggcctccagctgatcaacgggaagaacgagtcggctcac
atcacggacgccgtggccgtggtggctcagtccctgcaggagctgtttgagaaggagaac
atcacggagccgccgcggggctgcgtggggaacaccaacatctggcggaccgggccgctc
ttcaaacgggtgctgatggcatcgaagtacccggacggcctgacgggacgaatcgagttt
aacgacgacggcgaccgccgcttcgccacctacagcatcctgaaccaccagaaggcgggg
cgcgtcatccaggtgggcgtgttcaacgggacgcaggtggtgatgaatcctcagaggaag
atcatctggcctggaggagagacggagaaaccagtgggataccagatgtccaccaggctg
aagatcgtgacgatccaccaggagccatttgtttacgtgaagccgacgcagagcgacggg
acgtgtaagcaggagcacacggtgaacggagtcgtgatcaagaaggtgatctgtaccgga
cccaacggaaccatcccaggtcagcccatcgttcctcagtgttgctacggtttctgcatc
gacctgctcatcaagctggccatgagcatgaacttcacctacgaggttcacctggtggcc
gacggcaagttcggcacgcaggaacgggtgaacaacagcaacaagaaggagtggaacggc
atgatgggagagctgctgggcggcctggccgacatgattgtggcgccgctcaccatcaac
aacgagcgcgctcagtacatcgagttctccaagcccttcaagtaccagggcctgaccatc
ctggtcaagaaggaaatcccccgcagcactctggactcgttcatgcagccgttccagagt
actctgtggctgttagtcggtctgtcggtccatgtggtggcagtgatgctctacctacta
gaccggttcagcccgtttggaaggtttaaggtgaacagtgaagaagaagaagaagacgcc
ctgaccctgtcctccgccatgtggttctcctggggagttctgctcaactctgggatcgga
gaaggcgccccgcggagcttctccgccaggatcctgggcatggtgtgggcggggtttgct
atgatcatcgtggcgtcgtacaccgccaacctggcagccttcctggtgctggaccggcct
gaggagcgcatcactggcatcaacgaccccaggctgcgtaacccatcggataagttcatc
tacgccacggtgaagcagagctcggtggacatctacttccggcggcaggtggagctgagc
accatgtaccgccacatggagaagcacaactacgagagcgccgccgaggccatccaggcg
gtccgagacaacaagctccacgccttcatctgggacagcgccgtgctggagttcgaggcg
tcgcagaaatgcgacctggtgacgacgggggaactgttcttccgctccggcttcggcatc
ggcatgaggaaggacagtccctggaagcagaacgtctctctggctattctcagctcgcac
gagaacggcttcatggaggatctggacaagacgtgggttcgctaccaggagtgcgactcc
aggagcaacgcccccgccacactcacctttgagaacatggcaggtgtgttcatgctggtg
gccggcggcatcgtcgctgggatcttcctcatcttcatcgagatcgcctacaagcggcac
aaagacgcacgcaggaaacagatgcagctggccttcgccgccgtcaacgtgtggaggaag
aacctgcaggaaaccaggtaa
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