Candidatus Xiphinematobacter sp. Idaho Grape: AMD24_00712
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Entry
AMD24_00712 CDS
T04108
Symbol
hldD
Name
(GenBank) ADP-L-glycero-D-manno-heptose-6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
xii
Candidatus Xiphinematobacter sp. Idaho Grape
Pathway
xii00540
Lipopolysaccharide biosynthesis
xii01100
Metabolic pathways
xii01250
Biosynthesis of nucleotide sugars
Brite
KEGG Orthology (KO) [BR:
xii00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
AMD24_00712 (hldD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
xii01005
]
AMD24_00712 (hldD)
Enzymes [BR:
xii01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
AMD24_00712 (hldD)
Lipopolysaccharide biosynthesis proteins [BR:
xii01005
]
Core region
AMD24_00712 (hldD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
Polysacc_synt_2
CASP_dom
KR
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
ALJ56876
UniProt:
A0A0P0FJB7
LinkDB
All DBs
Position
759159..760211
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AA seq
350 aa
AA seq
DB search
MPNNFFSTKRKSPFCGNLGRILVTGGAGFIGSALVHVLNRQGWEDILIADFLGKGDKWKN
LRALRFDDCLPADRFLQKLEQSAAFYGDFSAVFHLGACSSTVECNLDYLLEKNYYYSLCL
AKWALARGIRFVYASSAATYGDGAQGLDDKNDNLHCYRPLNPYAYSKHLFDVYAQKYGLL
KHVVGIKYFNVFGPNEYHKGRMRSLVCKAYEQILDTGVVKLFRSSHPGYRDGEQKRDFIY
VRDAVKMTLHLAATSSAVGLFNVGSGMSRTWVELANAVFSVLRCPPRVEFVEMPESVHQQ
YQYFTCADISKLRLSGYSCSITPFEDSIREYIMHYLLSGVRLGDEKFEQT
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atgcccaataattttttttctacaaaacggaagtctcccttttgcgggaatttggggagg
attttggttactggaggagcaggcttcatcggaagtgccctcgttcatgtgcttaatcgg
caaggttgggaagatattttaattgctgatttccttggaaaaggtgataaatggaagaac
cttagagcgcttaggtttgatgattgtcttcctgcggaccgttttctgcagaaacttgag
caatccgcagcattttatggggatttcagtgccgtattccatctaggcgcctgctcctct
actgtcgaatgtaacttagactaccttctagaaaagaattactactacagtctttgcctg
gcgaagtgggcccttgcacgcggaattcgattcgtgtacgcttcctcggcggctacctat
ggagatggagcgcaaggactggacgataagaatgacaatctccattgctaccgtcccctt
aatccctacgcctactctaaacatctttttgatgtttatgcccaaaaatatgggcttctt
aagcacgtggtaggaatcaagtattttaatgtctttggtccaaacgaatatcacaaagga
aggatgcgcagcctagtctgtaaagcttatgagcagattcttgatactggggtagttaaa
ttgtttaggagctctcatcctggatatcgggatggagaacagaaaagggactttatatat
gtacgggacgcagttaagatgacactgcacttggctgcgacctcctctgcggtaggcctg
tttaatgttgggagtgggatgtcgcgcacatgggtggaactcgccaacgccgttttttct
gtgttgagatgccccccaagggttgagttcgttgaaatgccggaatctgtccatcaacaa
taccagtactttacttgcgcggatatttctaagcttcgcctatctggatattcttgctcg
atcaccccatttgaagattccattagggaatatattatgcactatctgctttctggagtc
aggctaggggatgagaaatttgaacaaacctaa
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