Xenopus laevis (African clawed frog): 108711840
Help
Entry
108711840 CDS
T01010
Symbol
polr2a.L
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03020
RNA polymerase
xla03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108711840 (polr2a.L)
09124 Replication and repair
03420 Nucleotide excision repair
108711840 (polr2a.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xla03021
]
108711840 (polr2a.L)
03400 DNA repair and recombination proteins [BR:
xla03400
]
108711840 (polr2a.L)
Enzymes [BR:
xla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108711840 (polr2a.L)
Transcription machinery [BR:
xla03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
108711840 (polr2a.L)
DNA repair and recombination proteins [BR:
xla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
108711840 (polr2a.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
108711840
NCBI-ProteinID:
XP_018109410
Xenbase:
XB-GENE-17343961
UniProt:
A0A974DIB1
A0A1L8H4P4
LinkDB
All DBs
Position
3L:161279358..161295543
Genome browser
AA seq
1968 aa
AA seq
DB search
MHGAPSGDSACPLRTIKRVQFGVIGPDELKRMSVTEGGIKYSETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHVELAKPVYHVGFLVKTMKVLRCVCFFCSKLLVDAN
NPKIKDILIKSKGQPKKRLTHVYELCKGKNICEGGEEMDNKFGVEQTEGDEDIQKEKGHG
GCGRYQPRIRRTGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRITDEECFILGMDPRF
ARPEWLIITVLPVPPLCVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV
IAEDVKLLQFHVATMVDNEIPGLPRAMQKSGRPLKSVKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLSIDQVGVPRSIAANMSFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIVPGHINC
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELVMGILCKKSLGTSAGSLVHISYLEMGH
DTTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEGVE
FQNLATLKPSNKAFEKKFKFDYANERALRRTLQEDVVKEILSDAHVQNELEKEFEKMKED
REVLRVIFPTGDSKVVLPCNLQRMIWNAQKIFHINTRMPSDLHPIKVVDGVRELSKKLVI
VNGDDPLSRQAQENATLLFNIHLRSTLSSRRMIEEFRLSGEAFDWLLGEIESKFNQAIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF
LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA
AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKFGMEIPTNIPGLGAGGPTGMF
FGTAPSPMGGMSPAMTPWNQGATPAYGAWSPSIGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYSPSSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPSYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEDN
NT seq
5907 nt
NT seq
+upstream
nt +downstream
nt
atgcacggggctccctccggggatagcgcctgtccgctacgtaccatcaaacgagtccag
ttcggcgtcatcgggcctgacgagttgaaacggatgtctgtaacagaaggtggaattaaa
tactcagagactacagagggtggtcgccccaagcttggaggattgatggacccacggcag
ggtgtcattgagaggagtgggagatgtcagacatgtgcaggtaacatgactgaatgtccc
ggccacttcgggcacgttgaattggccaaaccagtctatcatgttggatttctggtcaag
accatgaaagtgttgagatgtgtgtgcttcttctgctccaagcttctggttgatgctaac
aacccaaagattaaggacatcctaataaagtccaaagggcaacctaagaagcgactgacc
catgtgtatgagttgtgcaaggggaaaaacatttgtgaggggggagaagagatggacaac
aagtttggggtggagcagaccgagggtgatgaggacattcagaaagaaaagggacatggt
ggctgtggccgctaccaaccacgtattcgccgcactgggctggagctctatgctgagtgg
aaacacgtaaacgaggattcccaggagaagaaaatcttgctgagtcctgagcgtgtgcac
gagatcttcaagcgcatcacagatgaggaatgcttcattttgggaatggatccccgattt
gcacgtcctgagtggctcattatcactgtcctgcctgtgccccccctgtgtgtgagacca
gcagtcgtaatgcagggctcggccaggaatcaggacgacttgacacacaaactggctgat
attgtgaagattaataatcaactccggagaaatgagcagaatggagccgcagcccacgtc
atagcagaggatgtaaagctgcttcagttccacgtggcaacaatggtggataatgagatt
cctggtctgcccagggccatgcagaagtccggacgtcccttaaagtctgtaaagcagagg
ttaaaaggcaaagaggggagagtgagaggaaaccttatgggcaagcgtgtggacttctcc
gctcgaactgtcatcactcccgaccccaacctttccatcgatcaggttggggtgccgagg
tccatcgctgcaaacatgagcttccctgagattgtcactcctttcaacattgataggctg
caggagttggtccgccgagggaacagtcagtatcctggggccaagtacattatccgagat
aatggtgatcgtattgacctgcgatttcaccccaaacccagcgatctacacttacagatt
ggttacaaggtggagagacacatgtgtgacggagatatagtgatctttaacagacagccc
acgctgcacaagatgtctatgatgggacatagagttcggatcttgccatggtccactttc
cgtctgaacctgagtgtaaccactccgtacaatgctgactttgatggggatgaaatgaac
cttcaccttcctcagtctctggagacccgggcagaaattcaggagttggctatggttccc
aggatgattgtgactcctcagtccaacagacccgtcatgggtattgtgcaagacactctc
acagctgtgcgcaaatttaccaaaagagacgtctttctggaacggggagaggtgatgaat
ttgctgatgttcttgtccacgtgggatgggaaggtcccacaaccggccatcctgaaacca
cgtcctctgtggactggaaagcagatcttctctctcattgtcccagggcacattaactgt
atccgaacccacagcacacatccagacgatgaggacagtggcccgtataaacacatctct
ccaggagacacaaaggtgattgtggaaaatggggagcttgtcatgggaattctgtgtaag
aaatctctgggaacttcagctggttccttggttcatatttcctatttggaaatgggccac
gacactacccgtctgttctactccaacattcagactgtcatcaacaactggctacttata
gagggtcatacaattggaattggtgactccattgctgatgccaaaacctatcaggacatt
cagaataccatcaaaaaggccaagcaagatgtaatagaggtcatagagaaagcccataac
aatgaactggagcccacgccaggtaacaccctgcgtcagacttttgagaaccaggtaaac
aggatcctgaacgatgccagagacaaaactggctcctctgcccagaaatctctatccgag
tacaacaacttcaagtccatggtggtgtctggggccaagggatcgaagattaacatttcc
caggttattgctgtggtcggccagcagaatgtggagggaaagagaattccttttgggttc
aaacatcggacgctcccacactttattaaggatgattacggccctgagagtaggggcttt
gtggagaattcctaccttgctggtctgaccccaactgaattcttctttcatgccatggga
ggcagagagggtctgattgatacagctgtaaaaactgctgagacaggttacatccagaga
cgactgatcaagtctatggagtctgtcatggtaaagtatgacgccacagtgcgaaattcc
atcaaccaggtggtgcagctgagatacggagaggatggtctggctggggagggtgtagag
ttccagaatttggccaccttgaagccttcaaacaaagcatttgaaaaaaagttcaagttt
gattatgccaatgagcgggctttacgcaggacgctgcaggaggatgtagtgaaggagatt
ctcagcgatgcccatgtacagaatgaactggagaaggagtttgagaagatgaaggaggac
agagaagttctgagggtcatattcccaactggggacagcaaggtcgtccttccctgtaac
ctgcaaagaatgatttggaacgctcagaagatatttcatataaacacacgcatgccctca
gatcttcaccccattaaagttgtagatggggtaagggagctcagcaaaaaactggtgatt
gtaaatggggacgatcccctcagccgacaggcgcaggagaatgccaccctcctgtttaac
atccacctgcgctccaccctcagtagccggcgaatgatcgaggagttcaggctcagtgga
gaggcttttgattggctcttgggggagattgagtctaaattcaatcaagccattgcacat
ccaggagagatggtgggggctttggctgcccagtctctaggagagccagctactcagatg
accctgaacaccttccattacgccggtgtgtcggctaaaaacgtcaccctgggtgtccca
cgtctaaaggaactgatcaacatctcgaagaaaccaaagaccccttctctgacggtcttc
ttgctggggcagtctgctcgggatgctgagagggcaaaggatattctgtgccgcctggag
cacacaacactgcgcaaggtcacagccaacactgccatttattatgatccaaaccctcag
aatacggtggttgcagaggaccaggaatgggttaatgtgtactatgaaatgcccgacttt
gatgtgacgagaatctccccctggctgctccgcgtggaactggaccgcaagcacatgact
gaccgcaaactgaccatggagcagatagcggagaagattaatgcaggctttggggatgat
ctcaactgtatattcaatgatgacaacgctgagaaactggttttgagaatccggattatg
aacagcgaagaaaacaagatgcaggacgaggaggaagtcgtggacaagatggacgatgat
gtgttcctgcgctgcattgagtccaacatgctgacagatatgactctgcaagggattgaa
cagattagcaaggtgtacatgcatctcccccagactgacaataagaaaaagatcattatt
acagaggacggggagttcaaggcccttcaggaatggattctggaaacagacggtgtcagc
ctgatgcgtgtcctcagtgagaaggacgtggatccagtcagaaccacctcaaacgatatt
gtggagatatttacggtcctgggcatagaagctgtcagaaaagccctggagagggaattg
taccacgtcatctcgtttgatggttcatacgttaattaccgccacttggcgctactgtgc
gacaccatgacctgcagggggcatcttatggctatcacacgtcatggagtcaacaggcag
gacacggggccactcatgaaatgttcctttgaagagacggtggatgtgctgatggaagcc
gctgctcatggagagtctgatcccatgaagggggtgtctgagaatatcatgttgggacaa
ctggctccagcaggaacgggctgctttgacttactgttggatgcagagaagtgtaaattc
ggcatggagattcccaccaacattcctggccttggagcaggtggacccaccggcatgttt
tttggcactgcccccagccctatgggaggaatgtcacctgccatgaccccttggaaccag
ggagccaccccggcatatggagcctggtccccaagtatcggaagtggaatgacccccgga
gctgccggcttctctccaagtgccgcttctgatgccagtggcttcagcccaggttactcc
ccggcttggtcccccacccctggttctcctggatctccagggccttcaagtccctacatt
ccctccccaggtggcgctatgtctccaagttactctcctacctcccctgcttatgaaccc
cgaagccctggaggctacactccccagagccccagctattcaccaacttctccctcctac
agcccaacatccccttcttactcccccacaagtcccaactactctccaacatctcccagc
tattctcccacttctcccagctactctccaacatctccatcttacagccccacctctcct
tcctattctcccacaagcccaagctactcccccacttcacccagctacagcccaacatct
cccagttacagcccaacatcaccaagctactcccctacttctcccagttacagcccaaca
tcccccagctactcccctacttctcccagttacagcccaacatcgcccagctactctcct
acaagtcccagctactctcctacaagccccagttactcgccaacatctccatcttacagc
cccacctccccatcctactcccctacttcccccaactactccccttcttcccccaactat
acgccaacatctcccagttactctcccacttctcccagttacagtcctacctctcccagt
tactctcccacatctcctaattacagtccaaccagccctagttattctcccacatctccc
agttactccccctccagtcctcgttacaccccacagtctcccagctacacgccaagctct
cccagttacagcccaagttctcccagttactctcctaccagccccaaatacaccccaaca
agtccatcttacagccccagctccccagagtacaccccaacttctcccaagtactctcca
acatcacccaaatactccccaacttcacccaagtattcgccaacatctcccacatattct
cctacaactccaaaatactccccaacctccccaacctactcaccaacttcccctgtttac
accccaacctcacccaagtattcgccaacctctcccacttactctcccacctcccccaaa
tattcccctacctccccgacttattccccaaccagccccaaaggctccacgtactctcct
acttctccaggttacagccccacgtctccaacgtacagtctcaccagcccggcaatcagt
ccagatgacagtgatgaggacaactga
DBGET
integrated database retrieval system
