Xenopus laevis (African clawed frog): 108714510
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Entry
108714510 CDS
T01010
Symbol
tpr.L
Name
(RefSeq) nucleoprotein TPR-like isoform X1
KO
K09291
nucleoprotein TPR
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108714510 (tpr.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
108714510 (tpr.L)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108714510 (tpr.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
DUF384
Motif
Other DBs
NCBI-GeneID:
108714510
NCBI-ProteinID:
XP_041446636
Xenbase:
XB-GENE-17334899
UniProt:
A0A8J1MYT9
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Position
4L:117412886..117439565
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AA seq
450 aa
AA seq
DB search
MLTLHWKDSSPPLVREWHKAMKDQAAMEKAIMVKKGRLDKNTLIWQYWTVNQNTPPFPSR
GKRKWGYEEEEQEDDDEDEDDTGIGEGDDSNEETGSADGNEDYEGDDAEGADCTDPDTET
EDGMIAVEDNQRAADSQNIGDSGAGTAESTFPQETREQPSSASDRQGPRPPQSPRRQAHP
PRLTILAPPQELGPPPAQRIPVPRRQSVGRGLQLTPGVGAMQHFFDEEDRTVPSTPTLVV
PHRTDGFAEAIHSPQVAGVPRFRFGPPEDMPQASSSHWDLGQLASQGGLGMYETPLFLAH
EEESGGRSVPTTPLQVAAPVSVFAENPAADTSDHASQSVPMVTTSTGNVPTSVDSGAADE
GDEVFVEAESEGIGAESTLEMDTQQEEPVQPSEADLPSTSQDPPTVLLLTQAVANQSPEE
YGSNHSPVAVHLKDQEVCVLFSQTRLLPYI
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgcttactttgcattggaaggactcctctcccccattggtgcgtgaatggcataaagcg
atgaaagatcaagcagcaatggaaaaagcaataatggtcaaaaaaggccgcttggacaaa
aacacccttatctggcagtactggacggtaaaccaaaatacaccgcccttcccctctcgg
gggaaacgaaaatggggttatgaagaagaagagcaagaagatgacgatgaagatgaggac
gacactggcataggggagggggatgatagcaacgaagagactggcagtgctgatggtaat
gaagattatgaaggagatgatgctgaaggagctgattgtacagatcctgatactgagaca
gaggatggcatgattgcggtagaagacaaccaaagggcagcagactcgcagaatattggg
gattctggtgcaggtactgcagaatctacatttcctcaagaaacaagagaacaaccttca
tctgcttcagacaggcaaggcccccggcctccacaatcacctcgaaggcaagcccaccct
ccacgtctgaccatccttgctccaccacaggagctaggaccaccaccagcacagagaatt
ccagtgccacgcaggcaatctgtgggacgtggccttcaacttacacctggtgtaggtgcc
atgcaacacttttttgatgaagaagataggacagtgcctagcacacccacacttgtggta
ccgcatcggacagatggctttgcagaagctattcattccccacaggtagcaggtgtacct
cgtttcagatttggtccaccagaagatatgccacaggctagctctagccattgggacctt
ggccaacttgcctctcaaggaggtttaggaatgtatgaaactcccctcttccttgcacat
gaagaagagtcgggtggtcgcagtgttccaacaacaccactacaagttgctgcacctgtc
tcagtctttgctgagaatccagctgccgatacttccgatcacgcctcccagtctgttcca
atggtgaccacatctactgggaatgttcccacatctgtggactctggagctgctgatgaa
ggggatgaagtatttgtggaggcagaatctgaaggaattggtgcagaatccacacttgag
atggacacccaacaggaggaacctgttcaaccttctgaggcagatcttccttccacgagt
caagacccacctacagttctattgctgacacaagcagtagcaaaccaaagccccgaagag
tatggctccaaccacagcccggtggccgtccatttaaaagatcaagaggtttgtgtattg
tttagtcaaacccgcctgctaccttatatttga
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