KEGG   Xenopus laevis (African clawed frog): 108717904
Entry
108717904         CDS       T01010                                 
Symbol
ggps1.S
Name
(RefSeq) geranylgeranyl pyrophosphate synthase isoform X1
  KO
K00804  geranylgeranyl diphosphate synthase, type III [EC:2.5.1.1 2.5.1.10 2.5.1.29]
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla00900  Terpenoid backbone biosynthesis
xla01100  Metabolic pathways
Module
xla_M00367  C10-C20 isoprenoid biosynthesis, non-plant eukaryotes
Brite
KEGG Orthology (KO) [BR:xla00001]
 09100 Metabolism
  09109 Metabolism of terpenoids and polyketides
   00900 Terpenoid backbone biosynthesis
    108717904 (ggps1.S)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01006 Prenyltransferases [BR:xla01006]
    108717904 (ggps1.S)
Enzymes [BR:xla01000]
 2. Transferases
  2.5  Transferring alkyl or aryl groups, other than methyl groups
   2.5.1  Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
    2.5.1.1  dimethylallyltranstransferase
     108717904 (ggps1.S)
    2.5.1.10  (2E,6E)-farnesyl diphosphate synthase
     108717904 (ggps1.S)
    2.5.1.29  geranylgeranyl diphosphate synthase
     108717904 (ggps1.S)
Prenyltransferases [BR:xla01006]
 Terpene biosynthesis
  Prenyl diphosphate synthase
   108717904 (ggps1.S)
SSDB
Motif
Pfam: polyprenyl_synt
Other DBs
NCBI-GeneID: 108717904
NCBI-ProteinID: XP_018120843
Xenbase: XB-GENE-17338000
UniProt: A0A1L8G2P4 A0A974HHB6
LinkDB
Position
5S:complement(53050711..53136616)
AA seq 296 aa
MANSKEASERILLEPYKYLLQLPGKQIRTKLSQAFNHWLNVPDDKIQVIIEVTEMLHNAS
LLIDDIEDNSKLRRGFPVAHSIYGIPSVINSSNYVYFLGLEKVLTLNHPNAVHIFTQQLL
ELHRGQGLDIYWRDTYTCPSEEQYKAMVLQKTGGLFGLAVGLMQLFSTYDKDLKPLLNTL
GLFFQIRDDYANLNSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTEN
VDIKKYCVHYLEKVGSFEYTRKKLQELEAEAYKHVESLGGNPQLASLIEQLSKIYQ
NT seq 891 nt   +upstreamnt  +downstreamnt
atggcaaattcaaaagaggcatctgaaagaattttgcttgaaccatacaagtatttgctg
cagcttccaggtaagcagattagaacaaagctttctcaagcctttaaccactggttaaac
gttccagatgataaaatacaggttatcattgaagtgactgagatgcttcacaatgccagt
ttacttattgatgacatcgaagacaactcaaaacttcgtcggggctttccagttgctcat
agtatatatggcatcccatctgtaataaattcttctaactatgtttatttccttggtttg
gagaaagtcttaacgttgaatcatccaaatgctgtacatattttcacacagcagttactt
gaactccacaggggccagggactggatatttattggagagatacttacacttgccccagt
gaagaacagtacaaggctatggtactgcagaagacaggaggactgtttggattagctgta
ggacttatgcagttgttttcaacctatgataaagacttaaagccgcttcttaatacactt
ggattattttttcaaattagagatgattatgccaatttaaactctaaggagtatagtgaa
aataaaagtttttgtgaagacctaacagaaggaaagttttcatttcccaccatacatgct
atttggtcacgtcctgaaagtactcaagtgcaaaatatactgcggcaaaggacagagaat
gtagatatcaaaaaatattgtgttcattatttggaaaaggttggctcttttgaatacact
agaaaaaagctacaagaattagaagctgaagcatataaacatgtagaatcactaggtgga
aaccctcaactggcatcattaattgagcaacttagcaaaatatatcagtga

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