Xenopus laevis (African clawed frog): 108717904
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Entry
108717904 CDS
T01010
Symbol
ggps1.S
Name
(RefSeq) geranylgeranyl pyrophosphate synthase isoform X1
KO
K00804
geranylgeranyl diphosphate synthase, type III [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla00900
Terpenoid backbone biosynthesis
xla01100
Metabolic pathways
Module
xla_M00367
C10-C20 isoprenoid biosynthesis, non-plant eukaryotes
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
108717904 (ggps1.S)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
xla01006
]
108717904 (ggps1.S)
Enzymes [BR:
xla01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
108717904 (ggps1.S)
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
108717904 (ggps1.S)
2.5.1.29 geranylgeranyl diphosphate synthase
108717904 (ggps1.S)
Prenyltransferases [BR:
xla01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
108717904 (ggps1.S)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
Motif
Other DBs
NCBI-GeneID:
108717904
NCBI-ProteinID:
XP_018120843
Xenbase:
XB-GENE-17338000
UniProt:
A0A1L8G2P4
A0A974HHB6
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All DBs
Position
5S:complement(53050711..53136616)
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AA seq
296 aa
AA seq
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MANSKEASERILLEPYKYLLQLPGKQIRTKLSQAFNHWLNVPDDKIQVIIEVTEMLHNAS
LLIDDIEDNSKLRRGFPVAHSIYGIPSVINSSNYVYFLGLEKVLTLNHPNAVHIFTQQLL
ELHRGQGLDIYWRDTYTCPSEEQYKAMVLQKTGGLFGLAVGLMQLFSTYDKDLKPLLNTL
GLFFQIRDDYANLNSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTEN
VDIKKYCVHYLEKVGSFEYTRKKLQELEAEAYKHVESLGGNPQLASLIEQLSKIYQ
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atggcaaattcaaaagaggcatctgaaagaattttgcttgaaccatacaagtatttgctg
cagcttccaggtaagcagattagaacaaagctttctcaagcctttaaccactggttaaac
gttccagatgataaaatacaggttatcattgaagtgactgagatgcttcacaatgccagt
ttacttattgatgacatcgaagacaactcaaaacttcgtcggggctttccagttgctcat
agtatatatggcatcccatctgtaataaattcttctaactatgtttatttccttggtttg
gagaaagtcttaacgttgaatcatccaaatgctgtacatattttcacacagcagttactt
gaactccacaggggccagggactggatatttattggagagatacttacacttgccccagt
gaagaacagtacaaggctatggtactgcagaagacaggaggactgtttggattagctgta
ggacttatgcagttgttttcaacctatgataaagacttaaagccgcttcttaatacactt
ggattattttttcaaattagagatgattatgccaatttaaactctaaggagtatagtgaa
aataaaagtttttgtgaagacctaacagaaggaaagttttcatttcccaccatacatgct
atttggtcacgtcctgaaagtactcaagtgcaaaatatactgcggcaaaggacagagaat
gtagatatcaaaaaatattgtgttcattatttggaaaaggttggctcttttgaatacact
agaaaaaagctacaagaattagaagctgaagcatataaacatgtagaatcactaggtgga
aaccctcaactggcatcattaattgagcaacttagcaaaatatatcagtga
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