Xenopus laevis (African clawed frog): 398274
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Entry
398274 CDS
T01010
Symbol
polr1a.L, polr1a
Name
(RefSeq) polymerase (RNA) I polypeptide A L homeolog
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
398274 (polr1a.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xla03021
]
398274 (polr1a.L)
Enzymes [BR:
xla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
398274 (polr1a.L)
Transcription machinery [BR:
xla03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
398274 (polr1a.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
398274
NCBI-ProteinID:
NP_001082182
Xenbase:
XB-GENE-1005163
UniProt:
Q8UVY7
LinkDB
All DBs
Position
1L:18987381..19041942
Genome browser
AA seq
1730 aa
AA seq
DB search
MLLSKDAPWRRLQSISFGCYSAEEIRKLSVKALTNPRYMDSLGNPLMNGLHDLAQGPADG
KEVCSSCFQDFTSCPGHLGHIELPLTVYNPLFFDKLYFLVRGSCFHCHLLTCNRSVIHLL
LNQLKLLDRGVEHEVYELENVLHRVLEANAAATGHEIQEELENYTRKVLKKYKKLPRGTS
CQVKNTCVTRNRLIGNFWKKQMVSAKCPNCKAPRSVVRKEHNSKLTIIMSSKPSSSSKGG
AMPAEGDMDVIDSTQLAKRGYLTPNTTKELIMELWKNEGFFLQHLFSGITGGGESAFTPD
TFFLDIIVVPPSRFRPVNRLGDQMFTNGHTINLQSVLKDISTIQKLLAVMAQDQEQTPEL
TESGMNLKEAEVTENIDRSFLATLTGLSLTDKLYNSWVRLQSHVNIVFDSDMDKLMSDKY
PGIRQVLEKKDGLFRKHMMGKRVDFAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTP
WNVQELRKAVLNGPNVHPGASMVINEDGSRTILNSTDLSQRDAVAKQLLTPSTGTQTLNA
KIVCRHVKNGDVLLLNRQPTLHRPSIQAHKARILPGEKVLRLHYANCKAYNADFDGDEMN
AHFPQSELGRAEAYTIACTDEQYLVPKDGTPLAGLIQDHMVSGANMTIRGCYFTREQYME
LVYQGLTDKKGRVKLLPPAILKPHRLWTGKQVVSTLLINVIPENLIPLNLTGKAKIGGKA
WVKEQPRPIPGFSPDSMCESQVIIRNGELLCGVLDKAHYGSSSFGLVHCCYELYGGETSG
KLLTCLARLFTAYLKLYRGFTLGVEDILVLPYADAKRQNIVEHSMQCGGRAIRAAFNLAD
AASDEEAQGKWQDAHLAKDQRDFNMVDLKFKEEVNQFNNEINKVCMPFGLHRSFPENNLQ
LMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMPSGRSLPCFQPYDFSPRSGGFVTGRF
LTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSII
QFLYGEDGLDVPKTQFLQPKQFPFIAENYEVIKQSKRLDEVLSRVNTEQAEQHMHAIYRW
KAKHPNPGQRISPFLLYSQKQLPAVKASCPVEEYENGRDFASRQVLESWYSVNEKTLSRY
RRRASLLPDPCLAVWRPDLYLGSVSENFQSKMAQYGCAWEQQRNSSHDMSSLTFDSLKTL
LHLKWQRALCDPGDAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVA
SSNIKTPMMSVPVLNTKKAVKRAKQLKKRLTRVRLAEVIHKLEVEETFRIEEKSQKYQVY
KIRFHFLPHEYYRQEKMLRPEGVLRFMESRFFKIMFDAIKRKSSKLASFREVSTRRATQK
DVGDGEAQGNEESQRAENEEAQANDNDDDDNDNNINNNNDDDDDDAEDGDADATDAKRRK
KQEEEVDYESDEEAAEENNEEETEEKAPEAWGETLADEEERIGQEIEVESPTAVPGTPSQ
KLTKDVMAENRINDVLSLNPAIEDYSYDTEKSLWCEVTIKLQLMKIYFDICSLVSSLAHN
VIVHETSGITRCLLNETTNKQGDKELILNTEGINLYELFKYSSILDITRLYSNDIHAIAN
TFGIEAALRVVEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGTYRPLNRIGMQSSSSPFQ
QMTFETSYKFLKDATMNGARDDLQSPSACLVVGKVVKGGTGLFDLKQPMQ
NT seq
5193 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgtctaaagacgcaccatggcggcgcctgcagagcatctcgtttggctgttac
tcagcggaggagatcaggaagctgagtgtgaaagccctgaccaaccctcgctatatggac
agcctggggaatcctttgatgaacggcctgcatgatttggctcagggtcctgccgacggt
aaagaagtttgctcctcctgctttcaggactttacctcctgccccgggcacctgggacac
attgagctgcccctgaccgtgtacaacccgctgttctttgataaactgtattttctcgtg
cgaggctcctgcttccactgccacttgctcacctgcaaccgctcggttatccacttactg
ctcaaccagctcaagctccttgatcggggggtggagcatgaagtctatgagctggagaat
gtcctgcaccgggtgctggaggcgaatgctgctgccaccggccatgagatccaagaggag
ctggagaactacaccaggaaagtgcttaaaaagtataagaagctcccaagaggcacttct
tgccaggtgaagaatacgtgcgtgaccagaaaccggctgattggaaacttctggaaaaag
caaatggtttccgcaaagtgtcccaactgcaaggcaccgaggtcggttgtaaggaaagaa
cacaacagcaagctgactataataatgtcttccaaaccaagttcctcttctaaagggggt
gccatgccagcagagggggatatggatgtgattgacagtactcagttagcaaaacgtgga
tatctgactcccaacaccaccaaggaacttatcatggagctttggaagaatgaaggcttt
ttcctacagcatctcttttctggaataacgggcggtggggaatccgcgtttactccggac
acgtttttccttgacattattgttgtccctccctcgaggttccgaccagtcaatcgcctt
ggggatcagatgttcaccaatggtcacacgattaacctgcagtctgtcctcaaagacatc
tccactatacagaaactgctggctgtgatggctcaggatcaggagcagacgcctgagctc
actgaatcagggatgaacttgaaggaagccgaggttacggaaaatattgatcgttctttt
ctggccaccttgacgggcctgtcccttacggataagctttacaactcctgggtccggctg
cagagtcacgtcaatatcgtctttgacagcgacatggacaagctcatgtccgacaagtac
ccgggaatccgccaggtcctggagaagaaagacggtctgtttcggaagcacatgatgggg
aaacgagtggatttcgcagctcgctctgttatctgccccgacatgtacatcaacactaac
gaaattggaatccctatggtgtttgccactaagctgacgtacccccaaccagttactccc
tggaatgtgcaggagttgagaaaggctgtactaaacggacccaatgtccatccgggtgcc
tctatggtgatcaatgaggacgggtctcgcaccatattgaactctactgatttatcccag
agggatgctgtagcaaagcaactactcaccccatccactggcacacagactctgaatgct
aaaattgtgtgtcgacatgtgaaaaacggggatgtgcttctcctgaaccgacagcccacc
ctgcacaggccttccatccaggcccataaagcccgtattctcccgggggagaaggtgctc
aggctgcactatgccaactgtaaggcatacaatgctgacttcgatggggatgaaatgaac
gcacatttcccccaaagcgagctgggccgggctgaagcctacaccatcgcgtgtactgat
gagcagtacttggtgcctaaggatggtacaccccttgccggcttaattcaagatcatatg
gtgtctggtgcaaacatgaccatacgcggctgctattttaccagggaacagtatatggaa
ctggtttatcaagggctgacggataagaaaggcagagtaaaactcctcccaccagctatc
ctaaaaccccaccgactctggacaggaaagcaggttgtgtctacgttactgatcaacgta
atccctgagaatcttattcccctaaacctgacgggaaaagccaaaattggtgggaaagct
tgggtgaaggagcagcctcggcccattccgggattctcgcctgactccatgtgcgagtct
caggttataattcgaaacggagagttgctttgtggcgtcctggacaaagcgcactatggc
agctcttcctttggcctggtgcactgttgctatgagctgtacgggggagagaccagtggg
aaactgctcacttgcttggcgagactcttcactgcttacctcaagctctacagaggcttc
actttgggagttgaggacatccttgtgctcccatatgcagatgccaagagacagaatatt
gtggaacattcaatgcagtgtggtggaagggctatcagagcggccttcaacttggcagac
gcagcgtcggacgaagaagcgcaagggaagtggcaggatgcccatctcgcaaaggaccag
agagatttcaacatggtggatctgaagttcaaggaggaagtgaaccagttcaacaacgag
atcaataaggtgtgcatgccatttggcctccatagatccttcccagagaacaacctgcag
ctgatggttcagtcaggcgccaaaggatccactgtgaataccatgcagatttcctgttta
ttgggccagattgagctggagggacggaggcccccgctgatgccttctgggaggtcattg
ccttgttttcagccgtatgattttagtccacgttctgggggatttgttactgggcgattt
ctcaccggcatcaagcctcctgagttcttcttccattgcatggcagggagggaaggattg
gtggacacggctgtgaaaactagtcgatctggatatctgcagaggtgtgttattaagcat
ctggagggtcttgtggttcagtatgacctgacggtgcgagacagtgatggaagcatcatt
cagttcctgtacggagaggacggccttgatgtacccaagacacagtttctccagcccaag
cagttccccttcatagcagagaactatgaggttataaagcagtctaagcgcctggatgaa
gttctatcccgggtgaacacggagcaagcggagcagcacatgcacgccatctacaggtgg
aaagcaaaacaccccaaccccggacagcgaatcagccccttcctgctttactctcagaag
caactgccggcagtaaaggcgtcgtgtcctgtggaggaatatgagaatggcagggatttt
gcatccagacaagttctggagagctggtactccgtgaatgagaagacgcttagcagatac
aggagaagggcgtctcttctccccgatccctgtctggcagtgtggcgcccagatctttac
ttgggatcagtatctgaaaacttccaaagcaaaatggctcagtatggctgtgcgtgggag
cagcagaggaactctagccatgacatgtcgtctctgacatttgacagcttaaaaacctta
ctgcacctgaagtggcagagagcactgtgtgacccgggggatgcggtgggacttctggcc
gctcagagcatcggagagccctccacacagatgaccctgaacaccttccactttgctggc
agaggagagatgaacgtcacactgggtattcctaggcttcgggaaattctgatggtcgca
agctccaacataaagacgcccatgatgagtgtgccggtcctgaacactaagaaagctgtg
aagcgggcgaagcaactgaagaagcggctgacacgagtgcgcttggcagaggtgattcac
aaactggaagtggaggagacgttccgtatcgaggagaagtcgcagaagtaccaagtgtac
aagatcaggttccatttcctaccccacgagtactatcggcaggagaagatgctgcggcct
gagggggtcctgcgcttcatggaatcaaggttcttcaaaattatgtttgacgccataaag
aggaagagctccaagcttgcttctttccgggaagtgagcacacgcagggccactcagaag
gacgttggtgatggagaagctcaaggaaacgaggaaagtcagcgggcggagaatgaagag
gcacaagccaatgataacgatgatgatgataatgacaataatattaataataataatgat
gatgatgatgatgatgcagaggatggtgatgctgatgccactgatgcaaagaggagaaaa
aaacaagaagaggaggtggactatgagagtgatgaagaggcggccgaagaaaacaatgaa
gaagaaacggaggagaaggctcctgaggcatggggggagacattagctgatgaggaagag
aggattgggcaagagatagaggtggaatccccgactgctgtacctggcacaccctcccag
aaactcaccaaggatgtcatggcggaaaacagaatcaatgatgtactgagcctcaatcct
gctatagaagattactcctacgatacagagaaaagcttatggtgtgaggtcactatcaaa
ctgcagctgatgaagatctacttcgatatctgctccctggtgtcctccctcgcccacaat
gttatagtccacgagaccagcgggatcacccggtgcctcttgaacgaaacaaccaataaa
caaggggacaaagagctgattctcaacacggaggggataaatctgtatgaactattcaag
tattccagtattctggacattacgaggctttattcaaatgacattcacgccatagcaaat
acctttggcattgaggctgctttgcgggtggtggagaaggagattaaagacgtgtttgcg
gtttatggtattgaagtggatccccggcacctgtcgctggtagcggattacatgtgcttc
gagggcacctacaggcctctcaaccggatcgggatgcagtccagctcgtcgcccttccag
cagatgacgtttgaaactagctacaagtttctcaaggatgccaccatgaatggtgcacga
gatgacctgcagtctccgtcggcatgcttagtagtcggaaaagttgtaaaaggaggaact
ggcttatttgaccttaaacagccaatgcaataa
DBGET
integrated database retrieval system
