Xenopus laevis (African clawed frog): 398837
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Entry
398837 CDS
T01010
Symbol
brip1.L, bach1, brip1, fancj
Name
(RefSeq) BRCA1 interacting helicase 1 L homeolog
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03440
Homologous recombination
xla03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
398837 (brip1.L)
03460 Fanconi anemia pathway
398837 (brip1.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xla03400
]
398837 (brip1.L)
Enzymes [BR:
xla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
398837 (brip1.L)
DNA repair and recombination proteins [BR:
xla03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
398837 (brip1.L)
FA (Fanconi anemia) pathway
Downstream FA components
398837 (brip1.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
DEAD
Motif
Other DBs
NCBI-GeneID:
398837
NCBI-ProteinID:
NP_001083272
Xenbase:
XB-GENE-866151
UniProt:
Q6PAX0
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All DBs
Position
2L:95530945..95660364
Genome browser
AA seq
713 aa
AA seq
DB search
MSSVLSEYTIGGVKILFPCRAYPSQLAMMNSIMRGLNCKQHCLLESPTGSGKSLALLCSA
LAWQQSLYGKQLVDEKSDEKEWKKMERVTPCCCSCHLKNSDQTTFSSDRQMNSTDNAPSN
ISGASSNKTTLASKLCAKKQASFTTDQDDDFQTDRKRIRQSHDEQLQARKRRCYEKGVQF
IDDDDDDRDHVKFDSYNQRRASMDSCAEEAIAASSNHSAGPCSLCFCGQTKEEDKATEKC
KKENGEKPKVPKIFFGTRTHKQIAQITRELRRTAYSSVRMTILSSREHTCVHPDIHSNRN
ERCKELLEAKDGHSCRFYHGVHKMNEQSLLQYRHGIDKAWDIEELVGLGKRLRACAYFAA
RELMQGADIVFCPYNYLLDSQIRESMEICLENQVVILDEAHNIEDCARESASFSCSDEQL
MYARDEIDSMVNHGIRVSDHEPLRAVCYSLTNWIRQCSDQLVEREYEASCKVWNGKEILS
IFHDMGITNATFPLLKVNLAAVVEKEEKITMFHGQENVIKIPTLSPQSQMVLKGLFLVLD
YLFRQNNRFAEDYRVALQQSYTWTNRPDIPDENGFFARPRSRRSIRQKIMVYTLNFWCLN
PAVAFSDLSSNARTIVLTSGTLSPMGSFSSELGVKFSIQLEANHVIHKSQVWVGTVGAGP
KGRKLCATFQHTETFDFQDEIGALLLSVCQTVSHGILCFLPSYKVKYKNIVFL
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccgtactttcagaatatacaattggtggggtgaaaatcctcttcccatgtaga
gcgtatccttcccagcttgcaatgatgaattcaattatgagaggcctgaattgtaaacag
cactgcttgctagaaagtccaactggaagtggaaaaagcttagccttgttatgttctgca
cttgcatggcagcagtctttatatggaaagcagttggtggatgaaaaatcagatgagaaa
gagtggaaaaaaatggagagagttactccatgctgctgttcatgtcatttgaaaaattct
gatcaaactactttctccagtgatagacaaatgaattctacagataacgcaccatcaaat
atttccggagcttctagtaacaaaactacattagcttcaaagctgtgtgcaaagaagcaa
gcatcttttacaacagatcaagatgatgattttcaaactgacaggaaaaggattcgccag
tctcatgatgaacaactgcaggcaagaaaacgtcgttgttatgaaaaaggtgtgcagttt
attgatgatgatgatgatgatcgggatcatgtgaagtttgatagttacaatcaaagaaga
gctagcatggatagttgtgcagaggaagctattgctgcttcttccaatcattctgctggg
ccttgcagtctgtgtttttgtggtcagaccaaagaagaggataaagctactgaaaagtgc
aagaaggaaaacggagagaagccaaaagtgcccaaaatatttttcggtacacgtacacat
aagcagatcgcccagataacaagagaactaaggaggacagcttactcaagtgttcgcatg
accatactgtcaagtagggaacacacctgtgttcacccggatattcactcaaacaggaat
gaaaggtgcaaggaacttctagaagcaaaggatgggcactcatgtcgcttttatcatgga
gttcacaaaatgaatgagcaaagtttgctgcaatacagacatggcattgataaggcttgg
gacatagaagaactggttggattgggcaaaaggctacgtgcatgtgcttactttgctgcc
cgggagttgatgcagggtgctgatattgttttctgcccatacaattaccttttagattct
caaatcagggagagcatggaaatttgcttggagaatcaagtggttatcctagacgaagcc
cacaatattgaagactgtgcccgtgaatcggcaagttttagctgcagtgatgagcagctg
atgtatgctcgagatgagattgatagcatggtgaatcatggcatccgagttagtgaccac
gagcctctaagggctgtgtgctacagtttaaccaactggataagacaatgttctgatcag
ctagtagaaagagaatatgaagcatcctgcaaagtgtggaatggtaaagaaattctctca
atttttcatgacatgggcataacaaatgcaacctttcctctgctgaaagttaatcttgct
gctgtggttgaaaaagaagagaagataactatgttccatgggcaggaaaatgtaattaaa
attcctacactcagtccacaatcacagatggttttaaagggcctgtttctggttttggac
tacctctttcgtcagaataacaggtttgcagaagattatagagttgcccttcagcaatca
tatacatggacaaacagaccagatattccagatgaaaatggattttttgcaagacctaga
agcaggagaagtattcgacaaaagattatggtctacactctgaatttctggtgtctaaat
ccagctgtggcattctcagatctaagcagcaatgctcgcactattgtcttaacatcaggt
actttgtctccaatgggatcattttcatctgaacttggagttaagttttcaatacagctt
gaggcaaaccacgtgattcataaatcccaggtgtgggttggtactgtcggggctggtcct
aagggtcgaaagctttgtgcaacatttcagcacacagagacctttgattttcaggatgag
attggggccctccttctctctgtgtgccagacagtgagccatggaatactgtgctttctg
ccatcttacaaggtgaaatataagaacattgtttttttgtag
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