Xenopus laevis (African clawed frog): 431824
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Entry
431824 CDS
T01010
Symbol
clp1.L, clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
431824 (clp1.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
431824 (clp1.L)
Enzymes [BR:
xla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
431824 (clp1.L)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
431824 (clp1.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
AAA_16
CbiA
ATP_bind_1
nSTAND3
AAA_22
MMR_HSR1
AAA_18
AAA_29
AAA_24
Motif
Other DBs
NCBI-GeneID:
431824
NCBI-ProteinID:
NP_001084787
Xenbase:
XB-GENE-1008976
UniProt:
Q6NS21
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Position
7L:complement(61532593..61547183)
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AA seq
439 aa
AA seq
DB search
MSSEDLSAPGPSAPDSSWSSTGPSTKFELERETELRLEVEGTDPVRVELVSGLAEVFGTE
LTRNKKYTFPPGSRAAIFTWHGCTVQLWGSPDMAYVSRDTPMLLYLNTQVGLEQMRVQAE
REGERGPRVLVAGPSDVGKSTLCRLLLNYAVRRGRRPTLVELDVGQGSVSVPGTMGALCV
ERPADVEEGFSAQAPLVYHFGSTTPGTNIKLYNKLTSRLAHVFNLRCDSNRRASVSGCLI
NTCGWVKGSGYQALIHAASAFEVDVVLVLDQERLYNDLLRDLPHFVRTLLLPKSGGASER
SKECRRESRDQRVREYFYGPRGSLYPHAFEIKFSEVRVYKVGAPTIPDSCLPLGMSQEDN
QLKLVPVTPGRDMAHHLLSVVPLDGGSAEEGIEERSVAGFIVITGVDTERQTLTLLSPAP
RPLPKCVLLIMDIRFMDLK
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcagaagacctttctgcaccaggcccatcagctccagatagctcttggtcttcc
acaggcccatctacaaaatttgagttggaacgtgaaacggaactgaggcttgaggtggag
ggtacagatcctgtgcgagtggagctggtttcagggttggctgaagtatttggaacagag
ctgactcgaaataagaagtatactttcccccctggaagccgggcagctatatttacctgg
catggatgcactgtgcagctttggggaagtccagacatggcctacgtgtctcgggacaca
cctatgcttctgtacctgaacactcaagttggtttggaacaaatgcgagtgcaagcagag
cgtgaaggagagcgtggtcccagagtgcttgttgcagggccctctgatgtgggcaaatct
accttgtgtcgactgttattaaattatgcagtgcgaagaggccgcaggcccacacttgtg
gagctagatgtgggacaaggttctgtttctgtgccgggaacaatgggcgcattatgtgtg
gagaggccagccgatgtggaagaaggattctctgctcaggctcctctagtctaccacttt
ggatccactactcctgggacaaacatcaagttatacaacaagcttacctctcgtctggca
cacgttttcaacctgcgctgtgattctaatcgccgtgcatcagtcagtgggtgcctcata
aacacttgtggctgggtaaaaggttctggatatcaagctttgattcatgctgcatctgct
tttgaagtagatgtggtgctggtgctagatcaagagcgtctctataatgacctactgaga
gatctgccacactttgttcgcactttacttcttcctaaatctggaggtgcttctgagaga
tctaaagagtgtagaagagaatctcgagatcagcgtgtacgggagtacttctatggtcca
cgtggttcactgtaccctcatgcttttgagattaaattctcagaggtcagagtttacaaa
gtgggagcaccaacaatcccagactcttgtctccctcttggtatgtcacaagaagacaat
caattgaaactggttccagtgacccctggcagggacatggcacatcatttattaagtgtg
gttcctctagatggaggaagtgcagaggaggggattgaggaaagaagtgtggctgggttt
atagtgatcacaggtgtagatactgaaagacagactctcactttgctctctcctgctcct
agaccacttccgaagtgtgtgttactaattatggatatacgatttatggacttaaaatga
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