Xenopus laevis (African clawed frog): 432014
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Entry
432014 CDS
T01010
Symbol
cdkal1.S, cdkal1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xla03016
]
432014 (cdkal1.S)
Enzymes [BR:
xla01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
432014 (cdkal1.S)
Transfer RNA biogenesis [BR:
xla03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
432014 (cdkal1.S)
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Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
Motif
Other DBs
NCBI-GeneID:
432014
NCBI-ProteinID:
NP_001084956
Xenbase:
XB-GENE-5895849
UniProt:
Q6NS26
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Position
6S:80874385..81427724
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AA seq
556 aa
AA seq
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MPAVCESLLDDIEDMVSATDPKPHDRQSARKNIVPRARKRNKNNIQEEEPPADSTIPGTQ
KIWIRTWGCSHNNSDGEYMAGQLAAYGYSITEQPEKADLWLLNSCTVKSPAEDHFRNSIK
KAQEANKKVVVSGCVPQAQPRQDYMKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKD
NGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGELASYPVEELVDRATQ
SFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLVEVIPEGAMLRLGMTNPPYILEHLEE
MAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCIADFKRVVDFLKERVPGITIATDIIC
GFPGETDEDFKETLKLVEEYKFPSLFINQFYPRPGTPAAKMEQVLAHVKKRRTKELSQLF
HSYDPYDHKIGQKQQVLVTEESFDSQYYVAHNRFYEQVLVPKDPDFMGKMVEVKIFEAGK
HFMKGQPVQDSYIYTPSITKPLAKGEVSGLTEELKPPNNIPKSETLLEKHWERLQVFLFL
TALLAAVIAFVGTKLV
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgtctgtgagtctttgctggatgacattgaagatatggtctccgctacggac
ccaaagcctcatgatcgccagtctgctagaaaaaacatagtacccagagcacggaaaaga
aataaaaacaacattcaagaggaagaaccccctgctgatagcacaataccaggcactcag
aagatctggatccgtacatggggctgctcacataataactccgatggtgaatatatggcg
gggcagctggctgcatatggctacagtataaccgaacagcctgagaaagcagatttgtgg
ctgctaaacagttgcactgtgaagagtccagctgaggaccacttcaggaactccattaag
aaagcccaagaagcaaataaaaaagttgtagtgtctggatgtgttccccaagcacaacca
cgtcaagactacatgaaggggctgagtatcataggggtgcagcaaatagacagagtggtt
gaagttgtagaagaaacaattaaaggtcattctgtgagattgctgggtcagaaaaaggat
aatggaaaacggttggggggagctcgattggatttgccaaagatcaggaagaacccactg
atagaaatcatttccatcaatacagggtgtttgaatgcttgtacatactgtaaaaccaaa
catgcaagaggagaacttgccagttacccagttgaagaattggttgacagagccacgcag
tctttccaagagggtgtctgcgagatctggctgaccagcgaagacactggagcttatggc
agagacattgggacagatctcccaacgctcttatggaagctggttgaagttatccctgag
ggcgccatgctgaggctaggcatgaccaaccccccttatatattagagcacctggaggaa
atggcaaagatcctaaatcatccgcgagtgtatgcattcttgcatattcctgtacaatct
gcttcagacagtgtgctcatggacatgaagagagaatactgcatcgcagacttcaaacga
gtggtggattttcttaaagaaagagtgcccggaattacaattgctacggacatcatttgt
ggctttccaggagaaacagatgaagattttaaggagacgttaaaattggttgaggagtac
aaattccccagtctcttcattaatcagttttacccacgccctgggaccccagctgctaaa
atggagcaagttctagctcatgtgaaaaagcggaggaccaaggagctgtcccaactcttt
cattcatacgatccctacgatcacaagattgggcagaagcaacaagttttggtgacagaa
gagtcctttgattcccagtattatgttgctcacaatcgtttctacgaacaggttcttgta
cctaaggatcctgatttcatggggaaaatggttgaagtgaagatttttgaagcagggaaa
cattttatgaagggacagccagttcaagattcttacatctatactccatccatcactaag
cctctcgcaaaaggagaagtttctggattaaccgaggagttgaagccaccaaacaacatt
cccaaatccgagacccttctggagaaacactgggagcgactgcaagtcttccttttcctc
actgctctgctggctgctgtcattgcttttgttggaactaaattagtttaa
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