Xiphophorus maculatus (southern platyfish): 102233000
Help
Entry
102233000 CDS
T02923
Symbol
brip1
Name
(RefSeq) Fanconi anemia group J protein isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03440
Homologous recombination
xma03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102233000 (brip1)
03460 Fanconi anemia pathway
102233000 (brip1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xma03400
]
102233000 (brip1)
Enzymes [BR:
xma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102233000 (brip1)
DNA repair and recombination proteins [BR:
xma03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
102233000 (brip1)
FA (Fanconi anemia) pathway
Downstream FA components
102233000 (brip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
DEAD
Motif
Other DBs
NCBI-GeneID:
102233000
NCBI-ProteinID:
XP_023206461
Ensembl:
ENSXMAG00000005742
LinkDB
All DBs
Position
18:complement(31676945..31718785)
Genome browser
AA seq
1188 aa
AA seq
DB search
MASPVEYTIGGVKVHFPCKAYPSQLAMMNSIMRALNYGQHCLLESPTGSGKSLALLCSAL
GWQQAQMAKVKEGGGHPGDRSQSDKDVGDCKKSEPPSPCPCVCHREAAQSAVVDLTESPC
KETAQPSHTASEDVPLPGESQAKSPSLASRLSEKVQASLDPDCNKDEDFRPDRKRIRTAE
YKSHKRQRTQQGVIFIDDEPDLESETSGPQSWKTASTHQAAGLSSSCSSSEPCSRCPCAS
VKDNLKNKDKDKDGSKKIPKIFFGTRTHKQITQIAHELKRTVYSGVHMTILSSRDHTCVN
PDVAPHFNRNERCKDLLEAKDGRSCRFYHGVQKMRDQHTLQWVHGLREAWDIEDLVSLGK
RLRSCSYYAARELMQDASIIFCPYNYLLDPMIRESMEIDLEGQILVLDEAHNIEDCARES
ASYTLELSSLQTTKDELDGMVHSNIRRSKHESLRNFCYALINWIQESQVLLSERGFESAC
KVWSGKDILTVFHSLGVTFDTFCNMKQNLASVLEKEERVGLVNGKEDMVQVPIISASTAT
VLKNLFMVLDFLYRDSCRFAEDYRIALQRSYAWTNQVPPDVPDAQGFLVRPRHRNRQNAR
VKTEVLTLSFWCLNPAVAFSDLSGSVHSIVLTSGTLSPMGSFSSELGVKFTIQLEANHVI
NKSQVWVGTVGAGPQGRKLCATFQHAETFAFQDEVGDLLLHVCRVMVKGVLCFLPSYKML
DKLKDRWVNTGLWEKLEQEKTVITEPRGGGKGDFDELLQMYYDAIKTCEGRDGALLIAVC
RGKVSEGLDFTDDNARAVVTIGIPFPNIKDLQVELKMKYNDQHCKSRGLLPGHRWYEIQA
YRALNQALGRCIRHRNDWGALILVDDRYKNNPNKYIAGLSKWVRQLVQHHNTFSNAMQSL
KAFSEVQQNVEVAPVNNPTLNVSDLSNSSPLSVSAQSFNGEPEPRRTNSCDKPPYSQQNT
ITQLKTEHSNTAEPLKALRSAPAKQLSAQHLYHIFTINPTNTNLKTPIFKAKPANCSVRP
GALQISSPPMNLETLRTNQTDGNCLSENTEAPGVSTITTPPRFKSESPVPAKSSDDDKDK
SVFYTPELFEDEGNPPKENHVSSPRVDPGTERSATPSQDLATAFGEQSVVSVSKQSTELS
QGQKEDTEALQQSEKTEENESQSRQRGSRLHRLSRSRQRVSLSQTGNQ
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atggcctctcctgtggagtacaccatcgggggagtgaaggttcacttcccctgcaaggcg
tatccatcccagctagccatgatgaattctatcatgcgagcgttgaactacggacagcac
tgtttgttggagagccccacgggcagcggtaaaagtctggccttgctctgctctgccctg
ggctggcagcaggctcagatggctaaagtgaaagaaggaggaggtcatcctggagacaga
agccagtcagataaagatgtgggcgactgcaagaagtcagaacctcccagcccgtgtccc
tgtgtgtgccacagagaagcagcccagtctgctgtggtggacctcactgagtcaccctgc
aaagagacggcccagccatcgcacacagcatcagaagacgtgccactaccaggtgagtct
caagctaaaagcccgtctttagcatcccgtctgtcggagaaagtccaggcctctctagac
cccgactgcaataaagatgaggacttcagaccagacaggaagcgcatccgtactgcagag
tacaagagccataaaaggcagcgcacacaacaaggcgtcatattcattgatgatgaacct
gatttggagagtgaaacatctggtcctcagagctggaaaactgcctcaacccaccaggca
gccggtttgtcctcatcatgcagttcctccgaaccctgctcccgctgcccgtgtgcatca
gtcaaagacaacttgaagaacaaggacaaagacaaagatggcagcaagaagattccaaag
attttttttggcacacgaacccataagcagataactcagattgctcatgagctgaagcgc
accgtttattccggagtgcacatgactatcctttccagcagagatcacacctgtgtcaac
ccagacgtggcgccgcatttcaaccgcaacgaacgctgcaaggatctgctggaggccaaa
gatggaaggtcatgcaggttctaccatggtgtgcagaagatgcgggaccagcacaccctg
cagtgggtccatgggctgcgtgaagcctgggacatcgaagacctggtgtctctggggaaa
aggctccgatcctgctcttactatgctgctcgggaacttatgcaggatgcctctatcatc
ttttgtccgtataactacttgctggatccaatgatcagagagagtatggaaattgacctg
gaggggcagatcttggtgctggatgaggcccataacatagaagactgtgcaagggaaagc
gccagctacaccttagagctcagcagcctgcagacgaccaaagatgaactggacggcatg
gtccacagtaacattaggcgctccaagcacgagtctctcaggaacttctgctacgccctg
atcaactggattcaagagagccaggtgctgctgtctgaacgagggtttgagagtgcctgc
aaagtctggagtggaaaggatatactgaccgttttccacagcttgggtgtcacatttgac
accttctgtaatatgaagcaaaacctggcatctgtgttggagaaggaggagcgtgttggt
ttggttaacggcaaggaggacatggtgcaggtcccaattatcagcgcatctacagcaact
gtcctgaaaaacctcttcatggtgttggattttctctacagggacagctgccggtttgct
gaggactaccgcattgcattgcagaggagctatgcctggaccaatcaggtcccgcctgac
gttcctgatgcccagggctttttggtccggcctcgccaccgaaaccgtcaaaatgcacgg
gtcaaaacggaagttctcacgttgagtttctggtgtctcaaccctgctgtggctttctct
gacctcagtgggtcagtgcacagtattgtgctgacatcaggaacactgtcccctatgggc
tccttctcctctgaacttggggtaaaattcaccatccagttggaagccaaccatgtgatc
aacaaatcccaggtgtgggtgggcactgttggtgcaggaccccaaggccgaaaactctgc
gccacctttcagcacgctgaaacatttgccttccaggatgaggtgggggatttgctgctt
catgtctgccgggtcatggtcaaaggcgtgctctgctttctgccttcctacaagatgctg
gacaagctgaaagaccgttgggtcaacactggtctgtgggagaagctggaacaagagaaa
accgtcatcacagagccccgcggtggtgggaagggggactttgacgagctacttcagatg
tactacgatgccataaaaacttgtgaaggtagagatggtgcactacttattgctgtatgc
aggggtaaggtcagtgaaggcctagacttcacagatgacaatgccagagcagtagtgacc
attggaattccttttccaaacatcaaagacctccaggtggaactaaagatgaagtacaat
gaccagcactgcaagtcaagaggtctccttccaggccatcgctggtatgagatccaggcc
tacagagctctcaaccaggcgctggggagatgcatccggcacagaaacgactggggtgcc
ctgattctggtggatgaccgatacaagaacaatcctaataaatacattgcaggtttgtct
aaatgggtccgccagcttgtccagcatcacaacaccttcagcaatgctatgcagtctctg
aaagctttctctgaggtgcagcagaatgtggaggtggcccctgtgaacaacccgacgctc
aacgtttctgatttgtctaacagtagtcccttgtctgtgtcggctcagagttttaatgga
gaaccagaacctcggagaaccaattcatgtgacaaacccccttattcccagcagaacaca
atcacacagctgaaaactgaacacagtaacacagcagagccactgaaggcactgcgaagt
gctccagctaagcaactctcagcccagcatttgtatcacattttcaccatcaaccctaca
aacaccaaccttaagacgcccatctttaaagcgaaaccagcgaactgctccgtccggcct
ggggccctgcagatctcttctccaccaatgaatctggaaaccttgcgcactaaccaaacg
gatggaaactgtctcagtgaaaacactgaggctccgggggtgtccacaataaccacccct
ccccgctttaaaagtgaatcaccagtaccagcaaagtcttctgatgatgacaaagacaag
agtgttttctatactccggaactttttgaggatgaaggaaacccgccgaaagagaaccat
gtgtcctctcccagagttgatcctggcacagagagatcagccactccatctcaggattta
gccactgcatttggtgaacagagtgttgtttcagtcagtaagcaaagcacagagctatca
cagggccagaaagaggacacagaggcactgcagcaaagtgagaaaacagaggagaatgag
agccagagcagacagagaggaagtagacttcacaggctgtccaggtccagacagagagtt
tccctcagtcagacaggtaaccagtag
DBGET
integrated database retrieval system
