Xiphophorus maculatus (southern platyfish): 102236012
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Entry
102236012 CDS
T02923
Symbol
vcam1
Name
(RefSeq) vascular cell adhesion protein 1
KO
K06527
vascular cell adhesion molecule 1
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
102236012 (vcam1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
xma04090
]
102236012 (vcam1)
04091 Lectins [BR:
xma04091
]
102236012 (vcam1)
CD molecules [BR:
xma04090
]
Proteins
102236012 (vcam1)
Lectins [BR:
xma04091
]
I-type lectins (Siglecs)
102236012 (vcam1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
Ig_2
I-set
ig
V-set
C2-set_2
C1-set
Ig_5
ICAM1_3_5_D2
Ig_4
Ig_C17orf99
ICAM_N
Lep_receptor_Ig
Marek_A
Motif
Other DBs
NCBI-GeneID:
102236012
NCBI-ProteinID:
XP_005808470
Ensembl:
ENSXMAG00000005525
LinkDB
All DBs
Position
9:complement(30002232..30017179)
Genome browser
AA seq
846 aa
AA seq
DB search
MCRAHFLLQTQRQEHKGDAAAAASIHPSIHPFIQPSIQPSSRMDGCLQLLSVVLLMSSWC
VQGHRVSLSPRRPLLRLGSHQHMVCQVHDCPTEPSITWATVNDRPLRASNSANRTHSTLT
FDPVKIEDEGQLTCKARCGDGQAESRASVGVYSFPSDPEIAGQDRLRDRVEATLTCQVPN
LYPAWDLNLTWVRGDTVLKSTRGSGSSSFRFLPLREDSGGSITCRATLELPGLPSDYRTR
ETTTTLNVRYAPGLMNISDPVAVMSGSPLTLSCSAEGNPEPTITWTAGGRPLPGGRGGQL
ILSAVKLSDAGRYECETRNSEGNQTAAVNVTVLAPPTSTSLSVDPGEEVVEGQQVNFTCS
SEGAPPPSLVLRRKGEELLRTDSAPLLSFSLPSVSLEDSAHYECEASNQYGSQQESRSIT
VSAHPLQLYSSPQVSAERGSALILTCNASGCLHPPAFSWRRTDRNRTLLQRTEPQDGQSH
LHLLNLDLRHQGGYSCEAECDSVIRTREIHVQVYSFPSDPVLEDPGPVQLGQEVQLRCDV
TDIFSANQLRFRWLSGNRTLMAEMHRFSGSLQNVSSVLQLKAEEAARVVTCSVELLTADR
DVWRSRGTSVPLQIHYPPRSTVLSVCPGEEVLEGQRVTLTCRSDGAPPPAVVLRRNGEEL
LRSDANSSSLLSLSISSTLLEESGLYQCEASNQYGSQLVSNFITVKAPPRNTTVHIFPST
EVQEGQNVTVCCQTISFPPPAVILKKLSNGTELFSTSGTFLLVNVTSSDSGLYQVNVSND
LGSEVRVFSIRVREVRTGFPPGLSIILISAAGVAAGLTASALILDYMRRSRKKGFYQLPQ
SAPPSA
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgtgtcgagctcattttctgcttcagactcagagacaggagcacaaaggagacgctgct
gctgctgcgtccatccatccgtccatccatccattcatccaaccgtccatccagccgtcc
agcaggatggacggctgccttcagctcctctcagtcgtgctgctgatgtcatcgtggtgc
gttcagggccaccgggtcagcctgtcgcccaggcggcctctgctccggctcggctcccac
cagcacatggtctgccaggtccacgactgtcccacagaaccgagcattacctgggccacc
gtcaacgaccgacccctgagggcgtccaacagcgccaacagaacccactccactctgacc
tttgaccccgttaagatagaagacgaagggcagctgacgtgtaaggccagatgtggagat
ggacaggcggagagccgagcctccgtcggtgtttactcgttcccctcggaccctgagatc
gccgggcaggaccgcctcagagaccgcgtggaggcgaccctcacctgccaggtgcccaac
ctgtaccccgcctgggacctgaacctcacctgggtccgaggagacacggttctgaagagc
accagagggtctgggtccagctccttccgcttcctgcccctcagggaggattcgggaggg
agcatcacctgcagggcgacgctggagctgccgggtctgccgtcggactacaggaccaga
gagaccaccacaaccctgaatgtccgctatgctccaggcctcatgaacatctctgacccg
gtggcggtgatgtccggctcgccgctaactctcagctgttctgctgagggaaaccccgag
ccgaccatcacctggacggcaggcggtcgccctctgcccggaggtcgcggaggtcagctc
atcctatcggcggtgaagctttccgacgccggacggtacgagtgtgaaaccagaaactca
gaaggaaaccagactgcagctgtaaacgtcacagttttagctccgcccaccagcacctcc
ctctcagtggatccaggtgaggaggtggtggagggccagcaggtgaatttcacctgcagc
tctgaaggagctccgcctcccagcctggttctgaggagaaaaggggaggaacttctgagg
actgactccgcccccctgctcagcttcagccttccctccgtgtccctggaagactccgcc
cactacgagtgtgaagcctccaaccagtatggctcccagcaggagtccaggtctatcact
gtgagcgctcacccgctgcagctgtattccagtcctcaggtgtcagcggagcgcggctcg
gctctgatcctcacctgtaacgcctctggctgcctccacccgcctgccttcagctggagg
aggacggaccggaaccggaccctcctccagaggacggagccgcaggatggccagtcccac
ctccacctgctgaaccttgacctccggcatcagggaggctacagctgtgaggccgagtgc
gactcggtcatcaggaccagagagatccacgtccaggtctactcgttcccatctgaccct
gttctggaggatcccggtccggtccagctgggccaggaggtccagctgcgctgtgatgtc
accgacatcttctcggccaatcagctgcggttccgctggctgtcggggaaccggactctc
atggcggagatgcacaggttctccggctccctgcagaacgtctcgtccgtcctgcagctg
aaggcggaggaggcggcgcgggtcgtgacctgcagcgtggagctgctgacggcggaccga
gacgtctggaggtccagaggaaccagcgtccctctgcagatccactatcctccgaggtcg
accgtcctgtccgtctgtccaggtgaggaggtgctggagggccagcgggtgacgctgacc
tgccgttcggatggcgctccgccccccgccgtggtgctgaggagaaatggggaggagctt
ctgaggagcgacgccaactcctcttccttgctttccctcagcatctcctccaccctgctg
gaggagtcgggcctctaccagtgtgaagcctccaaccagtacggctcccagttggtctcc
aatttcatcaccgtcaaagctcccccgaggaacactaccgtccacatctttccttctacg
gaagtccaggagggccaaaatgtgactgtgtgctgccaaaccatcagcttccctccaccg
gcggtgatcctgaagaagctgagcaacgggactgagctgttctccaccagcggcaccttc
ctgttggtcaacgtcacttccagcgactcgggcttgtaccaggtcaacgtcagcaacgac
ctgggctccgaggtcagagtcttcagcatcagagtcagagaggtcagaaccggatttcct
cccggtttgagcatcatcctcatctcagccgccggcgtcgccgccgggctgacggcctcc
gctctgatcctcgactacatgaggagatccaggaagaaaggcttctaccagctgccgcag
tccgcgccgccgtcagcctga
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integrated database retrieval system
