Xenopus tropicalis (tropical clawed frog): 100158635
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Entry
100158635 CDS
T01011
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100158635 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xtr03021
]
100158635 (polr1a)
Enzymes [BR:
xtr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
100158635 (polr1a)
Transcription machinery [BR:
xtr03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
100158635 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Pox_C7_F8A
Motif
Other DBs
NCBI-GeneID:
100158635
NCBI-ProteinID:
XP_031751156
Xenbase:
XB-GENE-1005160
UniProt:
A0A6I8SZ42
LinkDB
All DBs
Position
1:18483372..18532999
Genome browser
AA seq
1784 aa
AA seq
DB search
MTVGSLRAVPLAEGGGGRSHGARAGLLHLSGSWYVPLPGPHVWPAEVREAERFEGTGQAA
QCGLPCRAMLISKDVPWRRLQGVSFGCYSAEEIRKLSVKALTNPHYMDNLGNPMMNGLYD
LALGPADGKEVCSTCAQDFNNCPGHLGHIELPLTVYNPLFFDKLYLLVRGSCFHCHLLTC
HRSVIHLLLNQLKVLDRGAVHEVHELENVLHRLLEANAAATGNEIREELGDHTRKVLKKY
KKQPGGISVKNTCVTRNQLIGNFWKTQMVSAKCPNCKAPRSVVRKEHNSKLTIIMSSKSS
ASSKGGNKPAEGDTEVADSSQLAKRGYLTPNSTKELIKALWENEGFFLQHLFSGITGNGE
SAFTPDTFFLDIIVVPPSRYRPVNRLGDQVFTNGHTVNLQAVLKDVSMIQKLLAVMAQDQ
EQMPEVTESGMSLKEGEVTENIDRSFLATLMGQSLTDKLYNSWVRLQSHVNIVFDSDMDK
LMTEKYPGIRQVLEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTY
PQPVTPWNVQELRQAVMNGPNVHPGASMVISEDGSRTILNSSNVSQREAVAKQLLTPSTG
AQTLAAKIVCRHVKNGDVLLLNRQPTLHRPSIQAHKARILPGEKVLRLHYANCKAYNADF
DGDEMNAHFPQSELGRAEAYSLACTDEQYLVPKDGTPLAGLIQDHMVSGANMTIRGCFFT
REQYMELVYQGLTDKRGRVKVLPPAILKPYPLWTGKQVVSTLLINVIPENLIPLNLTGKA
KISGKAWVKEQPRPIPGFSPDSMCESQVIIRDGELLCGVLDKAHYGSSSFGLVHCCYELY
GGETSGKLLTCLARLFTAYLQLYRGFTLGVEDILVLPYADAQRLNIVQQSLHCGGKAIRA
AFNLSEAASDEEAHGKWQDAHLSKDQRDFNMVDLKFKEEVNQFNNEINKVCMPFGLHRPF
PENNLQLMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMPSGRSLPCFQPYDFSPRSGG
FVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRD
SDGSVIQFLYGEDGLDVPKTQFLQPKQFPFIAENYEVIKQSKHLDEVLSRVNTEQAEQHN
HAIYRWKARHPNLSQRISPFLLYSQKQMAAAKASCPNELDENGRDLASRKVLESWYAANE
KTRSKYVRRSSTLPDPCLAVWRPDLYLGSVSENFQSKMAQYGCLWEEQRDSSQGMSSLTF
DSLKTLLHLKWQRALCDPGDAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR
EILMVASANIKTPMMSVPVLNTKKAVKKVKQLKKKLTRVCLAEVIHKLDVEETFRIEEKS
QKYQVYKIRFHFLPHEYYRQEKLLRPEGVLRFMETRFFKIMFDAIKRKSSKLASFREVGT
RRATQKDHGDGEDQGNQESQPVENEEEQVNADDDDDDAEEGDADATDKKRRKKQEEEVDY
ESEEEEAEEDNEEEVGSPEAGEETSADVKENTGDIVDEIEENSHSPVPARRPQSGLAKEV
VAENRINDVLSLNSAIEDYCYDTENSLWCEITIKLQLMKIHFDICSLVSSLAHSAIVHET
SGITRCLLNDTANKQGDKELILNTEGINLYELFKYSNILELRRLYSNDIHTMAKTFGIEA
ALRVVEREIKDVFAVYGIEVDPRHLSLVADYMCFEGTYKPLNRIGMQSSSSPFQQMTFET
SYKFLKDATMNGARDDLQSPSACLVVGKVVKGGTGLFDLKQPMK
NT seq
5355 nt
NT seq
+upstream
nt +downstream
nt
atgacagtaggaagtctgcgggctgtaccactggctgaggggggggggggcaggtcgcac
ggcgctagagcaggactcctccacttgtcaggcagttggtacgttccacttccgggtccc
cacgtgtggccggcagaagtccgggaggcggagaggtttgagggaaccgggcaagcggcg
cagtgtggcctcccctgccgggcaatgctcatctctaaggacgtgccatggcggcgcctg
caaggcgtctctttcggctgttactcagcggaggagatcaggaagctgagtgtgaaagcc
ctgaccaaccctcactatatggacaacctgggcaatccgatgatgaacggcctgtatgat
ctggccctgggtcccgctgacggcaaagaagtgtgctccacctgcgctcaggacttcaat
aactgccccgggcacctggggcacatcgagctgcccctgactgtgtacaacccgctgttc
tttgataaactgtaccttctggtccgaggctcctgcttccactgccacttgctgacctgc
caccgctcggttatccacttactgctcaaccagctcaaggtcctggatcggggggctgtg
catgaagtccacgagctggagaatgtcctgcaccggctgctggaggccaatgcggctgcc
actggtaatgagatccgggaggagctgggagaccacaccaggaaagtgcttaaaaagtat
aagaagcagcccgggggcatttctgtgaaaaatacctgtgtgaccagaaaccagctgatc
gggaacttctggaagacgcaaatggtttcggcaaagtgtcccaactgcaaggctccacga
tcagttgtaaggaaagagcacaacagcaagctgaccataattatgtcttccaaatcaagc
gcctcttctaaagggggcaacaagccggcagagggggacacagaagtggctgacagctcc
cagctagccaaacggggatatctgactcccaactccaccaaagaactgatcaaggcgctg
tgggagaatgaaggctttttcctgcagcatctcttttctggaataacaggcaatggggaa
tcggcctttactcctgacacgtttttcctagacattattgttgtccctccctcaaggtac
cgaccagtcaatcgccttggggatcaggttttcaccaatggtcacacagttaacctgcag
gctgtcctcaaagacgtctccatgatacagaaacttctggctgtgatggctcaggatcag
gagcagatgccggaggtcaccgaatcagggatgagcttgaaggaaggcgaagtcacggag
aatatcgaccgctcttttcttgccactttaatgggccagtcccttacggataagctgtac
aactcctgggtccggctgcagagccacgtcaatattgtcttcgatagcgacatggacaag
ctcatgactgaaaagtacccgggaatccgccaggtcctggagaagaaagaaggtctgttt
cgtaagcacatgatggggaagcgagtggattatgcagctcgctctgttatctgccccgac
atgtacatcaacaccaatgaaattggaatccctatggtgtttgccactaagctgacgtac
ccccagccggtcactccctggaatgtgcaagagttgagacaggctgtaatgaacggaccc
aacgtccatccaggtgcctccatggtgatcagtgaggatggctctcgcaccatattgaac
tcttccaatgtatcccagagggaagctgtagcaaagcaactactcaccccatccactggc
gcacagactctggctgctaaaattgtgtgtcgccatgtgaaaaatggggatgtgcttctc
ctaaaccggcagcccacccttcacaggccctccatccaggcccacaaagcccgtattctc
ccaggggagaaggtgctccggctgcactacgccaactgtaaggcgtacaatgctgacttc
gatggggatgaaatgaacgcgcatttcccccaaagcgagctgggccgggctgaagcctac
agcttagcatgtacagatgagcagtacttggtgcctaaggatggtacaccccttgccggc
ctaattcaagatcatatggtgtccggcgcaaacatgaccatccgcggctgctttttcacc
cgggaacagtatatggaattggtttatcaagggctgacagataagcgagggcgcgtaaaa
gtcctcccaccagctatcctgaaaccctacccactttggacaggaaagcaggttgtatct
acgttactaatcaacgtaatccctgaaaatctgattcccctcaacctgaccggaaaagcc
aaaatcagcgggaaagcttgggtgaaggagcagcctcggcctattccgggattctcgccg
gactccatgtgcgagtctcaggtaatcattagagacggggaattgctttgtggcgtcctg
gacaaagcccactatgggagctcttccttcggcttggtgcactgctgctatgagctgtac
ggaggcgagaccagcggcaaactgctgacttgcttggcgaggctcttcactgcctacctc
cagctctacagagggttcactctgggagttgaagacattcttgtgctaccctatgcagat
gcccagagactgaatattgtacagcaatcattgcattgtggtgggaaggctatcagagcg
gctttcaacttgtcggaagcggcgtcagacgaagaagcgcacgggaagtggcaggatgcc
catctcagcaaagaccagagagatttcaacatggtggatctgaaattcaaggaggaagtg
aaccagttcaacaacgaaatcaataaggtgtgcatgcctttcggcctccatcgacccttc
ccagagaacaacctgcagctgatggttcagtcaggagccaaaggatccactgtaaatacc
atgcagatttcctgtttattgggccagattgagctggaggggcggaggcccccactgatg
ccttctgggaggtcattaccttgtttccagccatatgattttagcccacgatctggagga
tttgttactggccgatttcttactggcatcaaacctcctgagttcttctttcattgcatg
gcagggagggaaggattggtggacacggctgtgaaaactagtcgctcgggatatctgcag
aggtgcattattaaacatctggagggtcttgtggttcagtatgacctgacggtgcgagac
agcgatggcagtgtcattcagttcctgtacggagaggacggcctcgatgtgcccaagaca
cagtttctccagcccaagcagtttccattcatagcagagaactacgaggttatcaagcag
tccaagcacttggatgaagttctatccagggtgaacacagagcaagcagagcagcacaat
catgccatctataggtggaaagcaaggcaccccaacctctcccagcgaatcagccccttc
ctgctctactctcagaagcaaatggcagctgcaaaagcatcgtgtcctaatgagctggat
gagaatggcagggatctcgcatccagaaaggtattggagagctggtatgcggcgaatgag
aagacacgtagcaaatacgtgagaaggtcgtctactctccctgatccctgcctggcagtg
tggcgcccagatctctacttgggatccgtatctgagaacttccagagcaaaatggcgcag
tatggctgtctgtgggaggagcagagggactccagccaggggatgtcctcgctgacattt
gacagcttaaaaaccttgctgcacctaaagtggcagagagcgctgtgtgaccccggggat
gcggtggggcttctggcagctcagagcatcggagagccctccacacagatgacgctgaac
actttccactttgctggcagaggagaaatgaacgtcactctgggaattcctaggcttcgg
gagatcctgatggttgcaagcgccaacataaagacgcccatgatgagcgtgccggttctg
aacactaagaaagctgtgaagaaggtgaagcaactgaaaaagaagctaacgcgagtgtgc
ctggcagaggtgatacacaaactggacgtggaggagacgttccgtatcgaggagaagtca
cagaagtaccaagtgtacaagatccgcttccatttcctaccccacgagtactatcggcag
gagaagctcctgcggcccgagggggtcctgcgcttcatggaaacaaggttcttcaaaatc
atgtttgatgccataaaaaggaaaagctccaagcttgcttctttccgcgaagtgggcacc
cgaagggccactcagaaggaccatggggatggggaagaccaaggaaaccaggaaagccag
cccgtggagaatgaagaagagcaagtcaatgcggatgatgatgatgatgatgcagaggaa
ggtgatgctgatgccactgataaaaaaagaagaaaaaaacaagaggaggaggtggactat
gagagtgaggaagaggaggctgaagaagacaatgaggaggaggtggggtctcccgaggca
ggagaggagacatctgctgatgtgaaagagaacactggggatattgtggatgaaatagag
gagaactcccactcccccgtacctgccaggagacctcaaagtggacttgccaaggaggtt
gtggccgaaaacagaataaacgatgtacttagcctcaattccgctatagaagattactgc
tatgatacagagaacagcttgtggtgtgagatcacaatcaaactgcagctgatgaagatc
cacttcgatatctgttccctcgtgtcctccctcgcccacagtgctatagtccatgagacc
agcggcatcacccggtgcctcttgaatgatacggccaacaagcaaggggacaaagagctg
attctcaacacagaggggatcaatctgtatgaacttttcaagtattccaatatcctggag
ctgaggaggctttattccaatgatatacacaccatggcaaaaacctttggcattgaggct
gctttacgggtggtagagagggagattaaagacgtgtttgcggtttatggtatcgaagtg
gatccccggcacctctcgctggttgcggattacatgtgcttcgagggtacctacaagcct
ctcaatcggatcgggatgcagtctagctcctcgcccttccagcagatgacatttgaaact
agctataaatttctaaaggatgccaccatgaatggcgctcgggatgacctgcagtctccg
tcggcgtgcttagtggttggaaaggttgtaaaaggaggcactggtttattcgaccttaag
cagcccatgaaataa
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integrated database retrieval system
