Xenopus tropicalis (tropical clawed frog): 100485503
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Entry
100485503 CDS
T01011
Symbol
polr1b
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100485503 (polr1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xtr03021
]
100485503 (polr1b)
Enzymes [BR:
xtr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
100485503 (polr1b)
Transcription machinery [BR:
xtr03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
100485503 (polr1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpa2_4
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-GeneID:
100485503
NCBI-ProteinID:
XP_002940442
Xenbase:
XB-GENE-1008539
UniProt:
F6ZV36
LinkDB
All DBs
Position
5:38729337..38750006
Genome browser
AA seq
1135 aa
AA seq
DB search
METDTKWQALLREPSLGKLTSPDYGIPGESQHPPLQDITRAHIDSFNQAMTEGLSLAVQA
MKPLEFTYKNDKVALQIVDAVITPPLVPKGSICKEQKIYPAECRGRRSTYRGKLTADVSW
SLNGLQKGIIKQTLGHIPIMVKSKFCNLYDLNPKQLLEHHEEEQEMGGYFIINGIEKVIR
MLIMPRRNFPIAMIRPKWKNRGPGYTQYGISLRCVRDEHTAVNMNLHYLENGSVMVNFIY
QKELFFIPLGFALKALVDYSDYQIFTELIKGKEENSFYRDCMTQMLRAVVEEGCHSQKNV
LKYLGERFRVKFYLPDWFTDEQAAEFLISQCICIHLKTNVEKFYMLCMMTQKLFTFAKDG
CMEENPDSLMYQEVMTPGQLLLMFLKEKMESWLLGVKVNLDKRAHKYTVDLSTETMMKVF
TSTSDLTKTCEYLLATGNLRSKTGLGMLQSSGLVVVADKLNFIRYLSHFRCVHRGAAFAK
MRTTSVRRLLPESWGFLCPVHTPDGEPCGLMNHMTAACEIVTQTSYNTLLPLLLCSLGMT
PVDGTAGKLFADCYPVMLDGAMVGWVEKTIAPGLVSALRNYKVKHEKNVPPWTEIVLIPM
TGKASLYPGLFLFTTPCRMVRPVRNLALGKEELLGTLEQVFLNVAVYEGDIVPGETTHQE
FFPHSMLSVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPLMTYQDRSDNKLYRLQTPQSP
LVRPSMYDYYEMDNYPIGTNAIVAVISYTGYDMEDAMVLNKSSWERGFAHGSVYKTDHVD
LSKKLKDGEDNLVFGIKPDDERVKGRLDSDGLPAVGAVLQFGDPYYGYLNLNTGESFVAY
YKSKENCVIDNIKICSNDIGFGKFKSVCVTMRIPRNPTIGDKFASRHGQKGILSRLWPSE
DMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFTFSEENSALE
YFGEMLRAGGYNFYGTEKLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDK
VTNQPVGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSTAHVCIECGSLLSPF
LEKPPPSWSSIRNRKHHCEVCDRTDTVETVSVPYVFRYFVAELAAMNISVKLSVS
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atggaaacggacactaagtggcaagcgctgctcagggagcctagcctgggcaaacttacc
agtcccgactatgggattcccggggagagccagcaccctcctctgcaggatatcactcgg
gctcatatcgactccttcaaccaagcaatgacagaggggctgagtctggcggtgcaggct
atgaaaccacttgagtttacttacaaaaatgataaggtggcattgcaaatagtggatgca
gttattacccctcctctagtgcccaaaggaagcatctgcaaagagcaaaagatataccca
gcagaatgcagaggaagaagaagtacataccggggcaagctgactgccgatgtaagctgg
tccttaaatggattgcaaaaaggcatcatcaaacaaaccctgggacatattcctatcatg
gtgaagtcaaaattttgcaacctgtatgaccttaacccaaaacaacttcttgagcaccac
gaggaagagcaagaaatgggaggatatttcattataaatggaatagaaaaggttatcaga
atgcttattatgcctcgaaggaactttcccatcgccatgattcgtcccaagtggaagaat
agagggcctggttacactcagtatggtatttcacttcgttgtgtcagagatgaacatact
gctgtcaacatgaacctgcactatctagagaatggctctgttatggtgaatttcatctat
caaaaggagctcttcttcattccactgggctttgcattaaaggctctagttgactattca
gattatcagattttcactgaattgatcaaaggcaaggaagagaattcattctacagagac
tgtatgacacagatgctgagggcagtggtggaggaagggtgccacagtcagaagaatgtc
ctcaagtaccttggggagcggttccgggttaagttttaccttcccgactggtttacagat
gaacaagctgcagagttccttataagtcagtgcatctgcatacatcttaaaaccaatgta
gaaaaattttacatgctctgtatgatgacacaaaagctgttcacgtttgccaaggatgga
tgcatggaggaaaatcctgacagcttaatgtaccaggaggtcatgacaccagggcagctt
ttactgatgtttttaaaggaaaagatggaatcgtggctgctaggagttaaggttaatctg
gacaagagagctcataaatatacagttgatctaagtactgaaaccatgatgaaagtattt
acttcaacatcagatctaacaaaaacgtgtgaatatctgctggctactggtaatcttcgc
tctaaaactggccttggaatgctacagtcttctggtctggtagtggttgctgacaagcta
aacttcattcgctacctttctcacttccgctgtgtacatagaggtgctgcttttgccaaa
atgagaaccacctcagtgcgtcgccttctgcctgagtcttggggtttcctgtgccccgta
cacactcccgatggtgaaccatgtggtctcatgaatcatatgactgcagcgtgtgagatt
gtgacacagacatcctacaacactttactgccattgctgctgtgctcattaggaatgact
cctgttgatggaacagccggaaaattgtttgcagactgctaccctgtcatgctagatgga
gccatggtgggttgggtggagaaaaccatagctcctggccttgtcagcgcacttcgaaat
tataaggtgaaacatgaaaagaatgtgcctccatggactgaaattgtccttatcccaatg
actgggaaagcaagtctgtaccctgggctttttcttttcaccaccccctgcaggatggta
cgtcccgtcaggaatttggccttgggtaaagaggaattgcttggcactttggaacaggtt
ttcttgaatgtggcagtttatgaaggtgatattgtacccggagagaccactcaccaggag
tttttcccgcacagcatgctgagtgtagtagcaaattttatccccttctcagaccacaac
cagagtcccagaaacatgtatcagtgtcagatgggtaagcagacaatgggcttccctctt
atgacttatcaggatcgctctgataacaaactgtaccggctacagaccccacagagtcct
ttagttcggccttccatgtatgattattatgagatggataactatcccattggcaccaat
gcaatcgtagcagtcatttcgtatacagggtatgacatggaggatgccatggtcttgaac
aagtcatcatgggaaagaggctttgctcatggaagtgtgtataaaactgatcacgtggat
ctcagtaaaaaacttaaagatggagaagataatctagtttttggcatcaaaccagatgat
gagcgggtgaaaggaagactggacagcgatggcctccctgctgttggtgctgttctgcag
tttggagacccttactatggctacctgaaccttaacacaggggagagctttgttgcctat
tacaagagtaaagaaaactgtgtaattgacaacatcaaaatctgcagtaatgacattggt
tttggaaagtttaagtctgtttgtgtcaccatgagaatcccccgtaatccaacaatcggg
gataaatttgcaagtcggcatggccaaaagggtattttgagtaggctttggccgtctgag
gatatgccatttacagagagtggaatggttccggacatccttttcaatcctcacggattt
ccctctagaatgaccattgggatgctgatagagagcatggctggaaagtcagcagccctg
catggtctctgccacgatgccacaccctttacattttctgaagaaaactctgcccttgaa
tattttggagaaatgctgagagcaggtggttacaatttctatggcacagagaaactatac
agtggcataagtggcctggaacttgaagccgatattttcattggggtggtttactaccag
cgccttcgacacatggtctctgacaagtttcaggttagaacaacaggtgccagggataaa
gttaccaaccagcctgtgggaggccgtaatgttcaaggtgggatacgttttggagaaatg
gagcgtgatgcactgctggcccacggtacctctttcctgcttcatgatcgactttttaac
tgctcggataggtcgacagcacatgtgtgcatagaatgtggaagcctactctctcctttc
ttggaaaagcctccgccttcctggtcatccatacgcaaccgaaaacaccactgtgaagtc
tgcgatcgtacggatactgttgagactgtatcagtaccttatgttttccgttattttgtg
gctgaattagcagccatgaatatcagtgtgaaactaagtgtgagctag
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integrated database retrieval system
