Xenopus tropicalis (tropical clawed frog): 100488612
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Entry
100488612 CDS
T01011
Symbol
vcam1
Name
(RefSeq) vascular cell adhesion protein 1
KO
K06527
vascular cell adhesion molecule 1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
100488612 (vcam1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
xtr04090
]
100488612 (vcam1)
04091 Lectins [BR:
xtr04091
]
100488612 (vcam1)
CD molecules [BR:
xtr04090
]
Proteins
100488612 (vcam1)
Lectins [BR:
xtr04091
]
I-type lectins (Siglecs)
100488612 (vcam1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
Ig_2
I-set
ig
V-set
Ig_4
Ig_5
SAG
ICAM_N
Adhes-Ig_like
Motif
Other DBs
NCBI-GeneID:
100488612
NCBI-ProteinID:
XP_002934188
Xenbase:
XB-GENE-492444
UniProt:
F7EI49
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Position
4:108896953..108907534
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AA seq
653 aa
AA seq
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METVKLFSVLALFIATSLAEFHMSLEPAQREISLQIGETFQFICEAFDCPNPTFNWANLM
DKTLSGSVSTEGSRSILTMQVSHESEGSYRCKVFCNQMKAEKSFTINVYSFPSDPVLHIS
SLVAGVQSNITCTVPLVYPSEMLSLRLLKDKETVAEYDTSVEIYQDGEFKLRDVSLSYAW
IPHIEDEGSVFKCEAEMLFMDEETKPITKDTKVILSIVCPPSTPSITVLPSKSVKAGENI
TLGCLAESHPQATVWWVKESGNVTNELPSENGYLGLTGVQPQDSGKYTCYVENEAGKSFS
SVLITVQVPPKNTRLTITPSELVRQGDRVIIQCMSEAFPAPTLILKRKTERGQVELETTS
GEYIITSVTVKHSGTYTCESVNPVGNEVAELHVTVQVPPQNTTVLVKPSKNVTEGDTVTI
TCETHSTTLPTILLKKVCAGNSTVQQAENGTFTLHNVTRNDTGTYVLSIINEAGNTTEVI
EINVQVPPKNTRLTITPSELVREGDHVIPHAVPPQNTTVLVKPSKNVTEGDTVTITCETH
STTHPTILLKKVCAGNSTVQQAENGTFTLHNVTRNDTGTYMVSIINEAGNTTEVIEINVQ
ARYQSPQSSFAIPIIATSLCAVSAAVIGLIVYHMKQARLQGSYSLVKALKSRV
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggagactgtaaaactattctctgttctggcactgttcattgcaacctcgctggctgaa
tttcacatgtccttggaacctgcacagagggagatttctctccagattggggagacattc
cagttcatatgcgaagcatttgattgtcccaatcccacctttaactgggcaaacctaatg
gataaaacattaagtggcagcgtaagcaccgaaggcagcaggtctatcctgaccatgcag
gtcagccatgagagtgaaggaagttaccggtgtaaagtattctgcaatcaaatgaaagca
gaaaaaagcttcactatcaatgtgtactctttcccaagtgatcctgttctacacatctca
tcccttgtggctggggttcagtccaatatcacctgtacagtcccccttgtttacccctct
gaaatgctgagcttgaggttactgaaggacaaggaaacggtggcagaatatgacacatca
gtggagatatatcaagatggggaattcaagctaagagatgttagcctatcctatgcttgg
atacctcatatagaagatgaaggctcagtatttaagtgtgaggcagaaatgttatttatg
gatgaagagacaaaaccaataaccaaagatacaaaagtgattctcagtattgtctgccct
ccttcaactcccagtattactgtcttaccatccaaaagtgttaaagctggtgaaaatata
actctaggatgcttggccgaaagccatccccaggcaactgtgtggtgggtgaaagagtct
ggaaatgtgacgaatgagttaccatcagaaaatggctacttgggattaactggagtacag
ccgcaagactctggcaaatacacctgctatgtagagaatgaagctgggaagagcttttcc
tcagtattgatcactgtacaagttccacctaaaaacacaaggctcaccattacgccctcc
gagttggtgagacaaggggatcgtgtaattatccaatgtatgtcagaagcattccctgcc
cccacactgatcctcaagagaaagacagaacgtggccaggtggagctggaaactacaagt
ggggagtacattatcacatctgtaacagtaaagcattcaggaacctatacctgcgaatct
gttaacccagttggaaatgaagtggcagagctccatgtgactgtgcaagtacctccacaa
aataccacagttcttgtaaagccatccaaaaatgtaacagaaggtgacaccgtgaccatc
acctgtgagacacacagtaccacacttccaacaattctgctgaagaaggtgtgcgccggc
aacagtacagtacagcaagcagagaatggcaccttcaccttgcacaatgtcacccgcaat
gacactgggacctatgtgctcagcataattaatgaagcaggaaatacgactgaagtcatt
gagatcaacgtacaagttccacctaaaaacacaaggctcaccattacaccctctgagcta
gtgagagaaggcgatcacgtaattccccatgcagtacctccacaaaataccacagttctt
gtaaagccatccaaaaatgtaacagaaggtgacaccgtgaccatcacctgtgagacacac
agtaccacacatccaacaattctgctgaagaaggtgtgcgccggcaacagtacagtacag
caagcagagaatggcaccttcaccttgcacaatgtcacccgcaatgacactggaacatat
atggtcagcataattaacgaagcaggaaatacgactgaagtcattgagatcaatgtacaa
gctcgatatcaaagcccccaatccagctttgccattccaatcatagcaacatccttatgt
gcagtatcagcagctgtcatcggactgattgtttatcatatgaagcaggcacgtctacag
gggtcatacagtctggtaaaggctctgaaaagccgagtttga
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