Xenopus tropicalis (tropical clawed frog): 100498309
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Entry
100498309 CDS
T01011
Symbol
pole
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03030
DNA replication
xtr03410
Base excision repair
xtr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100498309 (pole)
03410 Base excision repair
100498309 (pole)
03420 Nucleotide excision repair
100498309 (pole)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xtr03032
]
100498309 (pole)
03400 DNA repair and recombination proteins [BR:
xtr03400
]
100498309 (pole)
Enzymes [BR:
xtr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
100498309 (pole)
DNA replication proteins [BR:
xtr03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
100498309 (pole)
DNA repair and recombination proteins [BR:
xtr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
100498309 (pole)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1744
DNA_pol_B_exo1
DNA_pol_B
RNase_H_2
DNA_pol_B_exo2
APP_N
Motif
Other DBs
NCBI-GeneID:
100498309
NCBI-ProteinID:
XP_004910692
Xenbase:
XB-GENE-1011589
UniProt:
A0A8J0QX44
LinkDB
All DBs
Position
1:complement(144146840..144194753)
Genome browser
AA seq
2286 aa
AA seq
DB search
MVLQNSGKLRAEPRGDGENQQDDASASSAAKRLERSQWTDKIDAQYGFERIREPGEKTGW
LLNMHPNEILDEDKRLVSAVDYYFIQEDGSRFKVALPYKPYFYVATKKGCEREVSSFLSK
KFQGKLAKLETIPKEDLDLPNHLVGLKRGYIKLSFHSVDDLIKVRKEISPAVRKNKERDH
ASDTYTAMLSSALTGNNMGAEEEGPSKKISDQMENIVDMREYDVPYHVRVSIDLKIHVAH
WYNIRYRGSSSPPEITRRDDLVERPDPVVLAFDIETTKLPLKFPDAETDQIMMISYMIDG
QGYLITNREIVSEDIEDFEFTPKPEYEGPFCIFNEPDEAHLIQRWFEHMQETKPNIIVTY
NGDFFDWPFVETRASVHGMSMLQEIGFQKDNQGEYKSPPCIHMDCLRWVKRDSYLPVGSH
NLKAAAKAKLGYDPVELDPEEMCRMATEEPQVLATYSVSDAVATYYMYMKYVHPFIFALC
TIIPMEPDEVLRKGSGTLCEALLMVQAYHANIIFPNKQEAVFNKLTSDGHVLDSETYVGG
HVEALESGVFRSDIPCRFKMNPAAFDFLLQRVELTLRHAIEEEEKIPLEQVTNFQEVCEE
IKKKLNSLKEVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAMVDEVTCAACDFNKPGAT
CQRQMTWQWRGEFMPASRSEYHRIQQQLESEKFPPLFPGKPPRAFHELTREEQAKYEKKR
LADYCRKAYKKIHVTRLEEKVTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKLSSA
CESGDAAEIKRCKNMEILYESLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCYTGANI
ITQARELVEQIGRPLELDTDGIWCVLPNSFPENFVIKSTNAKKPKVTISYPGAMLNILVK
EGFTNHQYQELSDPATLTYITRSENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVFNED
GSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGSTLEEVYASVAKVADYWLDVLYSKAA
NMPDAELFELISENRSMSRRLEDYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRYVISR
KPEGSPVTERAIPLAIFQAEVGVKRHYLRKWLKNPSLQDLDIRSILDWDYYIERLGSAIQ
KIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDIYKQKRINELFTSEGKRQITAQMQQP
DSSQTPDMEDFGIGKRLQPAVPISTKRKRVPTAEDSQGDSQNLALTQSWREVLGPPPPLG
TTKEERLVWLRYHKKKWELQARQRKERQKKRRLEDGDVAPGAGGVIRETQAAGLGSFLRR
TARSILDMPWQIVQIGESSQPGLFRLWAVIGNDLHCIKLNIPRVFFVNQRIPKPEEGAVY
RKVNRILPRSNPVYHLYEYTVPEDMYQEHINEINADLSAPDIEGVYETQVPLIMRAVSQL
GCVCMVNKQLVRHLSGREADTFDLEHLEMKSLAQYSYLEPGSIRHIYLYHNSQGHKALFG
LFIPSQRKSAVFVVDTVRSNQMPNLSNMYTAEHTAMQERVDPELLPPEKHIFEVRAETDL
KTVYRGIQRLLLSYKDERRGPTLIAVQSNWNLRRLAAGMPVLEEFPLVPVRITDDISYGV
LDWQRHGARRMIRHYLNLDSCLSQAFEMARYYHLPVGNLPDDVSTFGSDLFFSRHLRRHN
HLLWLSPSARPDLGGKEADDNRLVMEFDEKASVEINNPGCYNTVCVELDIQSLAVNSILQ
SHHINDLEGAGSMGISFDVLQQASLEDMVTGNQASSVASYDETALCSNTFRILKSMVVGW
VKEITQYHNVYADNQVMHFYRWLRSPSSLLYDPALHRTLHNMMKKLFLQLVAEFKRLGSS
VVYANFNRIILCTKKRRVEDAVAYVEYITQSIHSREIFHSLTISVSRCWEFLLWMDPANY
GGVKGKLPSSVHYGESAKKKKALDGEGDDGSEDEEEDDQPVNSDDEQSEDQVEESLENNW
NIVQYLPQAASCQSYFLMIVSAYIVAVYHSMREEMRRNAPGNTPIKRRQNSQVSQEANAD
GGAMPGLITFSQDYVANELTQNFFTITQKIQKKVTGTRHATEPSEMFPILPGSHLPLNNP
ALEFIKYVCEVLALDSNITNQVNKLKRDLLRLVDVGEFSEDAQFRDPCRSYILPEIICRS
CNFCRDLDLCKDPAINQDGSVLPQWVCTNCQAEYDSDGIEMALVEALQKKMMAFTLQDLV
CMKCKGVKEANMPVYCNCAGDFTLTISVKVLLEQINVFRNIAQHYNMAHLLETIVWIMQQ
NSHLIQ
NT seq
6861 nt
NT seq
+upstream
nt +downstream
nt
atggtgctccagaacagtggaaagctacgagccgagcctcggggtgatggggagaatcag
caagatgatgcttccgcaagctcagctgccaagagactggaacgcagtcagtggacagac
aagattgatgctcagtatggttttgagaggattcgtgaacctggggaaaaaacaggctgg
ctgctcaatatgcacccgaatgagattctggatgaggacaaacgcctggtgagtgctgtg
gattattactttatacaagaagatggaagtcgatttaaggtagcactgccatacaaacca
tatttctatgtagccacaaagaagggttgtgagagggaggtttcctctttcctttccaaa
aagttccaggggaagctggcaaagttggagacaataccaaaggaagatctggatttgcca
aaccatcttgttggcctgaaacgaggctatatcaaattgtctttccactccgtggatgac
cttattaaagtgaggaaggagatctcccctgctgtgaggaagaacaaagagcgcgatcat
gccagtgacacttacacagccatgctctctagtgccctgactgggaataacatgggtgca
gaggaggaaggtccttccaagaagatctctgatcagatggagaatatagtagacatgcgg
gaatatgatgttccataccatgtgagagtttccatagatctaaaaatacatgtggcacac
tggtataatattcggtatcgtggaagctcttcccctccagaaatcacacgacgggatgac
cttgtggaaaggcctgacccagtagtcttggcatttgacattgaaaccacaaagctgcct
ttaaagtttccagatgctgaaacagaccaaattatgatgatttcctacatgattgatgga
cagggttacctgataacaaatcgagaaattgtatcagaggatattgaagactttgaattc
acaccaaagcctgagtatgaagggcctttttgcatctttaatgaaccagatgaggcacat
cttatccagagatggtttgaacacatgcaagagaccaagcccaatataattgtaacatac
aatggggatttctttgactggccatttgtagaaactcgtgcttcagtgcatgggatgagt
atgcttcaggagattggatttcagaaagacaatcaaggagaatacaaatctcctccttgc
attcacatggattgtctcaggtgggtgaagagagacagttatctgcctgttggaagtcac
aacctcaaagctgctgctaaagctaagctgggttatgacccagtggagctggatccagag
gagatgtgtcgcatggctactgaggaaccacaggtcctcgcaacatactctgtgtcagat
gcagtagcaacttattatatgtacatgaagtatgttcatcccttcatctttgccctctgc
actattattccaatggagcctgatgaggtcctgagaaaaggctcaggaaccctctgcgag
gcactgctgatggttcaggcataccatgcgaatataattttccccaacaaacaagaggca
gtgttcaacaagctaaccagtgatggccatgtgctggattctgagacctatgtaggtgga
catgtggaggctcttgagtctggagtgtttcggagtgatattccttgccgctttaaaatg
aacccagcagcttttgattttttgctccagcgtgttgagttaaccttgcgccatgcaatt
gaggaagaggagaaaattccacttgagcaggtcacaaacttccaagaggtctgtgaggag
attaagaagaaactcaattctcttaaggaggtgccaaatagaatagagtgtcctcttata
taccatcttgatgttggggcaatgtaccccaatattattcttacaaatagacttcagccc
tctgccatggtggatgaagtgacttgtgctgcttgtgacttcaataaacctggagctact
tgtcagcgacagatgacctggcagtggagaggagagttcatgcctgctagccgcagtgaa
tatcatcgcatacagcagcagctagagtctgaaaaatttccacctctctttcctgggaag
cctccacgagcatttcatgagttaacacgggaggaacaagcaaagtatgagaaaaagcgt
ttagcagattattgccgtaaagcatataaaaagatacatgtaacaaggctagaggagaaa
gtcacaaccatctgtcaaagggagaattccttttatgtcgacactgtgcgagcttttaga
gatcgaagatatgagtttaaagggctgcataaggtatggaaaaaaaagctctcttctgca
tgtgagagtggagatgctgctgaaattaagagatgtaagaacatggagattttgtatgaa
tctctgcagttggctcacaagtgcattctaaattctttctatggatatgttatgcgcaaa
ggagcccgatggtattccatggagatggctggtattgtgtgctacactggagccaacatc
atcacacaagctcgagaactggtagagcagattgggagaccacttgaactagatacggat
ggcatttggtgtgttcttcctaacagttttcctgagaactttgtaatcaaatcgacaaat
gccaaaaagccaaaagtaaccatatcatacccaggagccatgctaaacattctggtaaag
gagggttttacaaaccaccagtaccaagagctgagtgacccagccaccctcacttacata
acacgatctgagaacagtatcttctttgaggtggatggcccttatctggccatgatcctt
ccagcttccaaggaggagggaaagaagctaaagaaaaggtatgctgtgtttaatgaggat
ggatcacttgctgagcttaaaggatttgaggttaagcgaagaggagagctgcagttgata
aagatcttccagtcttctgtgtttgaggctttcctgaagggtagtacccttgaagaggtg
tatgcatctgtggcaaaggtggcagattactggctagatgtgctgtacagcaaggcagcc
aatatgccagatgctgaactatttgaactaatctcagaaaaccgttctatgtcccgacga
ctggaggattatggagaacagaagtccacttccatcagtactgcaaaaagactagctgag
tttctgggagaccagatggtcaaggatgccggtctaagctgtcgttatgtcatctctcgc
aaacctgaaggttccccagtcacagagagggccattcccctggcaatcttccaggctgaa
gtgggtgtaaaaaggcattacttgcgaaagtggctaaaaaatccttccttgcaggacctg
gatatacgttctattctagactgggattactacatagaaagattgggcagtgcaattcag
aagattattaccatcccagcagcactgcagcaggtgaagaatcctgtcccacgtgtacgt
catccagactggcttcataaaaagctgctggaaaaaaatgatatctacaaacaaaaacga
atcaatgagctgttcaccagtgaaggcaaaagacagatcactgcccagatgcagcagccg
gattcctcgcaaactccagacatggaagattttggaataggcaagcgtctgcaaccagca
gtgccaataagcaccaaaagaaagcgtgtcccaacagctgaagacagccaaggagactcc
cagaacctggctcttacccagtcttggcgtgaagttttgggaccgccacctccactaggt
accaccaaggaagaacgtctagtctggctccgttaccacaagaaaaagtgggagctacag
gcacgtcaacgaaaagagcgacagaagaaacgaagactggaggatggagatgtggcacca
ggtgcaggaggagtgatacgagaaacccaggcagctggacttggcagttttttgagacgg
actgcacgcagtattctagacatgccatggcagattgtgcaaattggtgaaagcagccag
ccggggcttttccgcctgtgggctgttattggcaatgacctgcactgcattaaactcaac
attcctcgtgttttttttgtgaaccagcgcatccctaaaccggaagagggagcggtctac
cggaaggtaaatcgaatcttacctcggtctaacccagtctaccatctttatgaatataca
gtaccagaggatatgtaccaagaacacatcaatgaaatcaatgcagacctctccgcccct
gatattgagggggtgtatgagacccaggttcctctaattatgcgagcagtaagtcagctt
ggctgtgtctgtatggtgaacaaacagctggtgcgacacctttcaggacgggaagcagac
acctttgacttagaacatttagaaatgaagtccctagctcagtacagctacttggagcca
ggaagcatcagacacatctatctgtatcataattctcagggtcacaaagcactctttggt
cttttcatcccttcccagcgaaaatcagctgtttttgtggtggacacggtccgcagtaac
cagatgccaaacctaagcaatatgtatacagcagaacacactgccatgcaggagagagtg
gatcctgaactcctgcccccagagaaacatatatttgaagtacgagcagagacagaccta
aaaacagtctacagaggaattcagagactgctccttagctataaggatgaaagacgtggc
ccaactctgattgcagtacagtctaattggaatttaagacggttagcagctggaatgccc
gttctggaggagttccctcttgtacctgtacgtataacagatgatattagctatggtgtg
ttggattggcagcgccatggagccagacgcatgatccgtcattatctaaacctggatagt
tgtctttcccaggcctttgagatggcaaggtattatcacttgcctgtgggtaacctacca
gatgatgtgtcaacctttggatctgacttgttcttctcaagacaccttcgcaggcacaat
catcttctttggctatcgcctagcgcccgtcctgatctggggggcaaagaagcagatgat
aaccgtttggttatggagtttgatgagaaggcatcagttgagatcaacaatccaggatgc
tataatactgtgtgtgtcgagctggatatccagagtctggcagtaaatagtatccttcag
tcccatcacatcaatgacctggagggagctggaagtatgggaataagctttgatgtcttg
cagcaagcctctcttgaggatatggtcactggaaaccaagcaagctctgtggccagctat
gatgaaacagccctctgttctaacaccttcaggattctgaaaagcatggtggtgggctgg
gtaaaggaaatcacacagtatcacaacgtctatgctgataaccaagttatgcacttttat
cgttggctgcggagtccatcctctctgttatacgatccagctttgcatcgaactttgcac
aacatgatgaagaagctattcttacaacttgtagcagaattcaagcgtctgggatcctct
gttgtttatgccaactttaaccgtattatcctgtgcacaaagaagcgtcgagtggaagat
gctgttgcctatgtagaatacattacacagagcatccattctcgggagatctttcactct
cttaccatctcggtgtcacgttgctgggagtttctgctttggatggatccagcaaattac
gggggcgtcaaaggaaagctcccttccagcgttcattatggagagagtgcaaagaagaag
aaagcgctagatggtgagggggatgatggcagtgaagatgaagaggaagatgatcaacca
gtgaattcagatgacgagcagtcagaagatcaagttgaagaatcccttgagaataattgg
aatattgttcaatacctgccccaggcagcatcctgtcaaagctacttcttgatgatagtg
tctgcttacattgtggcagtgtatcacagtatgcgtgaggagatgagacggaacgcccca
ggcaatactccaattaaacgcaggcagaacagtcaagtctcccaagaagctaatgctgat
ggaggtgccatgccaggtcttatcacattttctcaagattatgtggcaaacgaactgact
cagaacttcttcaccatcacacagaagatccagaaaaaagtaactggaacacgtcatgcc
acagaaccctctgaaatgtttcccattttaccagggtcacacctgccccttaataaccct
gccttggagttcataaaatatgtttgcgaggtactggcactggattcaaatataacaaac
caagtaaacaagctgaagagagaccttctaaggctagttgatgttggagaattctcagaa
gatgcacagttccgtgatccatgccgttcttatatcttacctgaaatcatatgcaggagc
tgtaatttctgccgggatctagatttatgcaaagatcctgctataaatcaggatggatct
gtgctacctcagtgggtttgtacaaactgccaggctgaatatgactctgatggtattgag
atggctttggtagaggctctacagaagaaaatgatggcttttactcttcaggatttggta
tgtatgaagtgtaaaggagtgaaagaagccaacatgccggtgtattgcaactgtgcagga
gacttcacgctcactatatctgttaaggtgcttttggagcagattaatgtatttcggaac
attgcacagcattacaacatggctcaccttctggagacaattgtctggattatgcaacaa
aattctcatctcatccagtga
DBGET
integrated database retrieval system
