Xenopus tropicalis (tropical clawed frog): 116409862
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Entry
116409862 CDS
T01011
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03020
RNA polymerase
xtr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
116409862 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
116409862 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xtr03021
]
116409862 (polr2a)
03400 DNA repair and recombination proteins [BR:
xtr03400
]
116409862 (polr2a)
Enzymes [BR:
xtr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
116409862 (polr2a)
Transcription machinery [BR:
xtr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
116409862 (polr2a)
DNA repair and recombination proteins [BR:
xtr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
116409862 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
116409862
NCBI-ProteinID:
XP_031755515
UniProt:
A0A6I8R7L6
LinkDB
All DBs
Position
3:153761380..153781028
Genome browser
AA seq
1968 aa
AA seq
DB search
MHGAPSGDSACPLRTIKRVQFGVIGPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDAN
NPKIKDILIKSKGQPKKRLTHVYELCKGKNICEGGEEMDNKFGVEQTEGDEDIQKEKGHG
GCGRYQPRIRRTGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRITDEECFILGMDPRF
ARPEWLIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLSIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIVPGHINC
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DTTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEGVE
FQNLATLKPSNKAFEKKFKFDYANERALRRTLQEDVVKEILSDAHVQNELEKEFEKMKED
REVLRVIFPTGDSKVVLPCNLQRMIWNAQKIFHINTRMPSDLHPIKVVEGVRELSKKLVI
VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMVEEFRLSGEAFDWLLGEIESKFNQAVAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF
LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVSEDQEWVNVYYEMPDF
DVTRISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA
AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKFGMEIPTNIPGLGAGGPTGMF
FGTAPSPMGGMSPAMTPWNQGATPAYGAWSPSIGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPSYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEDN
NT seq
5907 nt
NT seq
+upstream
nt +downstream
nt
atgcacggagctccctccggggacagtgcctgcccgctgcgcaccatcaagcgggtccag
ttcggcgtcatcgggcctgacgagttgaaacgcatgtctgtaactgaaggtggaattaaa
taccctgagacaaccgagggcggccgccccaagctgggaggattgatggacccacggcag
ggtgtgattgagagaactgggagatgtcagacttgtgcaggtaacatgactgagtgtccc
gggcactttggccacattgaactggccaaacctgtctttcatgttggatttttggttaag
accatgaaagttctgcgatgtgtgtgcttcttctgctccaagcttctggttgatgccaac
aatccaaagattaaagacatcctaataaaatccaaagggcaacccaagaagcgactgacc
catgtgtatgagttgtgcaaggggaagaacatttgtgagggcggagaagagatggacaac
aagtttggggtggagcagacagagggtgatgaggatattcaaaaagagaagggccatggc
ggctgcggtcgctaccagccacggatacgccgtacagggctggagctctatgctgaatgg
aaacacgtgaatgaggattcccaggagaagaaaatcttgttgagtcccgagcgcgtacac
gagatctttaagcgcatcacagacgaggaatgctttatattgggaatggatccccgattc
gctcgtcctgagtggctcattgtcactgtcctgccggtgccccccttgtctgtgcgaccg
gcagtcgtaatgcagggctctgccagaaatcaggatgacttgacacacaaactggccgat
atcgtgaagattaataatcagctcaggagaaatgagcaaaatggagctgcagcccacgtc
atagcagaggatgtgaaacttcttcagttccatgtggcaacaatggtggataatgagctt
cctggtctgcccagggccatgcagaagtctggacgccccctaaagtctctaaaacagagg
ttaaagggcaaggaggggcgagttcgaggaaacctaatgggcaagcgtgtggacttctct
gctcgaaccgtcatcacacccgaccccaacctttctatcgatcaggttggggtgccgagg
tccattgctgcaaacatgaccttccctgagattgtcactcctttcaacatcgacaggctg
caggagttagtgcgccgtgggaacagccagtaccctggggccaagtacattatccgagat
aacggcgatcgtattgatctgcggttccaccccaagcccagcgatctacacctacagatt
ggttacaaggtggagagacacatgtgcgacggagatatagtcatctttaacagacagccc
acgttgcacaagatgtctatgatggggcacagagttcggatcctaccatggtccacgttc
cgtctgaacctaagtgtaaccactccgtacaacgctgactttgatggggacgagatgaac
cttcaccttcctcagtctctggagacacgggcagaaattcaggagctggctatggttccc
aggatgattgtgactcctcagtccaacagacccgtcatgggtattgtgcaggacacactg
acagcagtgcgcaaattcaccaagagagatgtctttctggaaaggggcgaggtgatgaat
ttactgatgttcttgtccacgtgggacgggaaggttccccaaccagccatcctgaaacca
cggcctctctggactggaaagcagatcttctctctcatcgtcccagggcacattaactgt
attcgaacccacagcacccatcctgacgatgaggacagtggcccctataaacacatctct
cctggggacacaaaggtgattgtggagaatggggagcttattatgggaattctgtgcaag
aaatctctgggaacttcagctggatccttggtccatatttcctatttggaaatgggtcac
gacactacccgtctgttctactccaatattcagactgtcattaacaactggctgcttata
gagggtcataccattggaattggtgactccattgctgatgccaaaacatatcaggacatt
cagaataccatcaaaaaggccaagcaagatgtaatagaggtcatagagaaagcccataac
aacgagctggagcccacccccgggaacaccctgcgtcagacattcgagaaccaagtcaac
aggatcctgaacgatgccagagacaaaaccggctcctccgcccagaaatctctctccgag
tacaacaacttcaagtccatggtggtgtctggggccaagggatcaaagatcaacatttcc
caggttattgctgtggtcggccagcagaacgtggagggaaaacgcattccgtttgggttc
aaacatcgaacgctgccgcactttattaaggatgattatggccctgagagtaggggcttt
gtggagaactcctaccttgctggcctgaccccaaccgagttcttctttcacgccatggga
ggcagagagggtctgattgatacagctgtaaaaactgctgagacaggctacatccagaga
cgactgatcaagtctatggagtctgtcatggtaaagtacgatgctacggtgagaaattcc
atcaaccaggtggtgcagctgcgctacggagaggacggcttggccggggagggtgtcgag
ttccagaatctggccacattgaagccttcaaacaaagcatttgagaaaaagtttaagttt
gattacgccaatgagcgcgccctgcgccggactctacaggaagatgtcgtcaaggagatt
ctcagcgacgcccacgtacagaacgaactggagaaggagtttgagaagatgaaggaggac
cgagaagttctcagggtcatattcccaactggggacagtaaggtggtccttccctgtaac
cttcagagaatgatctggaacgctcagaagatctttcacatcaatacacggatgccctcg
gatctgcaccccattaaagttgtagaaggggtaagggagctcagcaagaaactggtgatt
gtaaatggggatgatcccctcagccgacaggcgcaggaaaatgccaccctgctgttcaac
atccacctgcgctccaccctctgcagccggagaatggtggaggagttcaggctgagtgga
gaggcttttgactggctcttgggggagatcgagtccaagtttaaccaagctgttgcccac
ccaggagagatggtgggggctttggctgcccagtccctaggagagccggccactcagatg
actctgaacaccttccattatgccggcgtgtcggctaaaaacgtcaccctgggggtcccg
cgtctgaaggaactgatcaacatctccaagaaaccgaaaactccttctctgactgtgttc
ctgctggggcagtctgctcgggatgccgagagggcaaaggatatcctgtgccgcctggag
cacaccactctgcgcaaggtcacggccaacactgccatttattatgacccaaacccccaa
aataccgtcgtttccgaggaccaggagtgggtgaatgtgtactacgaaatgccagacttt
gatgtgacccggatctccccctggctgctccgcgtggagctggaccggaagcacatgact
gaccgcaaactcaccatggagcagatcgctgagaagatcaatgcaggctttggagatgat
ctgaactgtatattcaatgatgacaatgctgagaaactggttctgagaatccggatcatg
aacagtgaagagaataagatgcaagatgaggaggaagtcgtggacaagatggacgacgat
gtgtttctgcgttgcattgagtcaaacatgctgactgacatgactctgcaggggatcgag
cagatcagcaaggtgtacatgcacctcccccagactgacaataagaagaagatcattatt
acagaggacggcgagttcaaggccctacaggaatggattctggaaacagacggcgtcagt
ctcatgcgagtcctgagcgagaaggatgtggatcccgtcagaaccacctcaaacgatatc
gtggaaatatttacggtcctgggcattgaagctgtcaggaaagccctggagagggagttg
taccacgtcatctcgtttgatggttcttatgtcaactaccggcacttggcgctgctgtgc
gacaccatgacttgccgggggcatctaatggccatcacccggcacggtgtcaacaggcag
gacacggggccactcatgaaatgttcctttgaggaaacggtggatgtgctgatggaagcc
gctgcccatggggagtcggatcccatgaagggggtatcggagaatattatgctggggcag
ctggcgccggcaggaactggctgctttgacttactgttggatgcagaaaaatgtaaattc
ggcatggagattcccaccaacattcccgggctcggagcggggggaccgaccggcatgttt
ttcggtactgcccccagccctatgggcggcatgtcccctgccatgaccccttggaaccag
ggagctaccccagcgtatggagcctggtcccccagcatcggaagcggaatgaccccggga
gctgccggtttctccccaagtgccgcctccgatgccagcggcttcagcccaggttactcc
ccggcttggtcccccacccctggctctcctggatccccggggccctcaagtccctacatt
ccctccccaggtggcgctatgtctccaagttactctcctacctcccctgcgtatgaaccc
cgaagccctgggggctacaccccccagagccccagctattccccaacgtccccctcctac
agcccaacgtccccttcctactcccctacatctcccaactactctcctacatctcccagt
tattctcccacttctcccagttactctccaacctccccatcttacagccccacctctcct
tcctactctcccacaagcccaagttactcccccacttcccccagctatagccctacaagt
cccagttactccccgacgtctcccagttactcgccaacttctcccagctacagcccgaca
tcacccagctactccccaacgtctcccagttacagccccacatcccccagttactctcct
acaagtcccagctactctcccacaagccccagttactctccgacatctccatcttacagc
cccacgtctccctcctactctcccacctcccccaactactcccctacttcccccaactat
acaccaacatctcccagctactcccccacctcccccagttacagtcccacctcccccagt
tactcccctacatctcctaattacagcccaaccagccctagctactctcccacatctccc
agttactcgccctccagtccccgctacaccccccagtctcccagctacacgccaagctcc
cccagttacagccccagttcccccagttactctcctaccagccccaaatacaccccgaca
agcccctcctacagccccagctccccagagtacaccccaacgtctcccaaatactctcca
acctcccccaaatactcgccaacctcgcccaagtattcgccaacctcgcccacatattct
cccacaactcccaagtactcgcccacctctcccacctactcgccaacttcacccgtctac
accccaacctccccaaagtactctccaacctctcccacctactctcccacctcccccaaa
tactctcccacctccccaacatattccccaaccagccccaaaggctccacctactccccc
acctccccggggtatagccccacctccccgacctacagcctcaccagcccggcaatcagc
ccagatgacagtgatgaggacaactga
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integrated database retrieval system
