Xenopus tropicalis (tropical clawed frog): 394802
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Entry
394802 CDS
T01011
Symbol
cdkal1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xtr03016
]
394802 (cdkal1)
Enzymes [BR:
xtr01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
394802 (cdkal1)
Transfer RNA biogenesis [BR:
xtr03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
394802 (cdkal1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
TraT
Motif
Other DBs
NCBI-GeneID:
394802
NCBI-ProteinID:
NP_989194
Xenbase:
XB-GENE-5895778
UniProt:
Q6P4Y0
LinkDB
All DBs
Position
6:94396518..94873599
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AA seq
553 aa
AA seq
DB search
MPAACESLLDDIEDIVSATDPKPHDRQNARQNIVPRARKRNKNKIQEEEPPADSTIPGTQ
KIWIRTWGCSHNNSDGEYMAGQLAAYGYSITEQPEQADLWLLNSCTVKSPAEDHFRNSIK
KAQEANKKVVLSGCVPQAQPRQEYMKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKD
NGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGELASYPVEELVDRAAQ
SFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLVEVIPEGAMLRLGMTNPPYILEHLEE
MAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCIADFKRVVDFLKERVPGITIATDIIC
GFPGETDEDFKETLKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAHVKKQRTKELSQLF
HSYSPYDHKIGEEQHVLVTEESFDSQYYVSHNRFYEQVLVPKDPAFVGKMVEVKIFEAGK
HFMKGQPVQDSYIYTPSITKPLAKGEVSGLTEESKPPNNPESLLQTSREGLQTFFFVTAL
LAAVIAFVGIKLL
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgcctgtgagtctttgctggatgacattgaagacattgtctcagctacagac
ccaaagcctcatgatcgccaaaatgcaagacaaaacatagtacccagagcacggaaaaga
aataaaaacaaaattcaagaggaagaaccccctgctgatagcacaatacctggcactcag
aagatctggatccgtacatggggctgctcacataacaactccgatggtgaatatatggcg
ggacaactggctgcatatggctacagcataactgagcagcctgagcaagcagatttgtgg
ctactgaacagttgcactgtgaagagtccagctgaggaccacttcaggaactccattaag
aaagctcaagaagcaaacaaaaaagttgtactgtctggatgtgtacctcaagcgcaacca
cgtcaagagtacatgaaaggactgagtatcataggggtgcagcaaatagatcgtgtggtt
gaagttgtagaagaaacaattaaaggtcactctgtgagactgctgggtcagaaaaaggat
aatggaaaacggttggggggagctcgattggatttgccaaagattaggaagaacccactg
atagaaatcatttccatcaatacagggtgtttgaatgcttgcacatactgtaaaacaaag
cacgcaagaggagaacttgctagttacccagtggaagaattggttgacagagctgcacag
tctttccaagagggtgtctgtgagatctggctgaccagcgaagacactggagcttatggc
agagacattgggacagatctcccaacgctcttatggaagctggttgaagttatccctgag
ggcgctatgctgcggctaggcatgaccaaccccccttatatattagagcacctggaggag
atggcaaagatcctgaatcatccaagagtgtatgcgttcctgcacatccctgtacaatct
gcctcagacagtgtgctcatggacatgaagagagaatactgtattgcagacttcaaaaga
gtggtggattttcttaaagagagagtgcccggaataacaatcgctacggacatcatttgt
ggctttccaggagagacagatgaggattttaaggagacattaaaattggttgaggagtac
aaattccccagtctcttcattaatcagttttacccacgccctgggaccccagctgctaaa
atggagcaagttccagctcatgtgaaaaagcaaaggaccaaggagctgtcccaactcttc
cattcatatagtccctatgatcacaagattggggaggagcaacacgttttggtaacagaa
gagtcctttgattcccagtattatgtgtctcataatcgtttctacgaacaggttcttgtc
cctaaggatcctgcatttgtgggaaaaatggttgaagtgaaaatttttgaagcagggaaa
cattttatgaaggggcaaccagttcaagattcttacatttatactccatccattactaag
cctctagcaaaaggagaagtttctggattaacggaggagtcaaagccaccaaacaacccc
gaatcccttctgcagacgtcccgggaaggactacaaaccttcttttttgtcactgctctg
ctggctgctgtcattgcttttgttggaataaaattgctttaa
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