KEGG   Xenopus tropicalis (tropical clawed frog): 448728
Entry
448728            CDS       T01011                                 
Symbol
polr2f
Name
(RefSeq) DNA-directed RNA polymerases I, II, and III subunit RPABC2
  KO
K03014  DNA-directed RNA polymerases I, II, and III subunit RPABC2
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03020  RNA polymerase
xtr03420  Nucleotide excision repair
xtr04623  Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    448728 (polr2f)
  09124 Replication and repair
   03420 Nucleotide excision repair
    448728 (polr2f)
 09150 Organismal Systems
  09151 Immune system
   04623 Cytosolic DNA-sensing pathway
    448728 (polr2f)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:xtr03021]
    448728 (polr2f)
   03400 DNA repair and recombination proteins [BR:xtr03400]
    448728 (polr2f)
Transcription machinery [BR:xtr03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     448728 (polr2f)
  RNA polymerase III system
   RNA polymerase III
     448728 (polr2f)
  RNA polymerase I system
   RNA polymerase I
     448728 (polr2f)
DNA repair and recombination proteins [BR:xtr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      448728 (polr2f)
SSDB
Motif
Pfam: RNA_pol_Rpb6 BDHCT_assoc
Other DBs
NCBI-GeneID: 448728
NCBI-ProteinID: NP_001006888
Xenbase: XB-GENE-491031
UniProt: Q6DDA6
LinkDB
Position
4:122154129..122158563
AA seq 127 aa
MSDNEDNFDGDDFDDVEEDEGLDDLDNAEEEDQENVAILPAGEGQQANQKRITTNYMTKY
ERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGV
DELIITD
NT seq 384 nt   +upstreamnt  +downstreamnt
atgtctgacaacgaggacaactttgatggagatgattttgatgatgtcgaagaggatgag
ggacttgatgatttggacaatgcagaagaggaagaccaggagaatgtggcaattcttcca
gctggggaaggccagcaggccaaccagaaacgcatcaccaccaattacatgacaaaatat
gagcgggcccgtgtgctgggaactcgtgccctgcaaatagcgatgtgtgcccctgtcatg
gtggagcttgaaggagaaacggaccccctacttattgccatgaaggaacttaaagccaga
aagatccctataatcatacgccgttaccttccagacggcagttatgaggactggggggtg
gatgaactcatcattaccgactaa

DBGET integrated database retrieval system