Xenopus tropicalis (tropical clawed frog): 549876
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Entry
549876 CDS
T01011
Symbol
ggps1
Name
(RefSeq) geranylgeranyl pyrophosphate synthase
KO
K00804
geranylgeranyl diphosphate synthase, type III [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr00900
Terpenoid backbone biosynthesis
xtr01100
Metabolic pathways
Module
xtr_M00367
C10-C20 isoprenoid biosynthesis, non-plant eukaryotes
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
549876 (ggps1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
xtr01006
]
549876 (ggps1)
Enzymes [BR:
xtr01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
549876 (ggps1)
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
549876 (ggps1)
2.5.1.29 geranylgeranyl diphosphate synthase
549876 (ggps1)
Prenyltransferases [BR:
xtr01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
549876 (ggps1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
Motif
Other DBs
NCBI-GeneID:
549876
NCBI-ProteinID:
NP_001017122
Xenbase:
XB-GENE-944146
UniProt:
Q28GZ4
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All DBs
Position
5:55947524..55968787
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AA seq
296 aa
AA seq
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MANSKEVSERILLEPYKYLLQLPGKQIRTKLSQAFNHWLNVPEDKIQVIIEVTEMLHNAS
LLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLNHPNAVHVFTQQLL
ELHRGQGLDIYWRDTYTCPTEAEYKAMVLQKTGGLFGLAVGLMQLFSSYDKDLKPLLNTL
GLFFQIRDDYANLNSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTEN
VDIKKYCVHYLEKVGSFEYTKETLRELEAEAYKHIESLGGNPQLASLIEQLSKMYQ
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atggcaaattctaaagaggtatctgaaagaattctgctggaaccatacaagtatttactt
cagcttccaggtaaacagataagaacaaagctttctcaagccttcaaccattggttaaat
gtcccagaagataaaatacaggttatcattgaagtgactgagatgcttcacaatgccagt
ttacttattgatgacattgaagacaactctaaacttcgtcgaggttttccagttgctcac
agcatatatggcattccttctgtaataaattctgctaactatgtatatttccttggtttg
gagaaagtcttaacattgaatcatccaaatgctgttcatgtttttacacagcagttactt
gaactccacagaggccagggactggatatttattggagagatacttacacttgcccaact
gaagcagaatacaaagctatggtactgcaaaagacaggaggactatttggattagctgta
ggacttatgcagttgttttcatcctatgataaagacctaaagccgcttcttaatacactt
ggattattttttcaaattagagatgattatgccaatttaaactctaaggagtatagcgaa
aataaaagcttttgtgaagacctaacggaaggaaagttttcatttcccaccatacatgct
atttggtcacgacctgaaagtactcaagtgcaaaatatactgcggcagaggacagagaat
gtagacatcaaaaaatattgtgttcattatttggagaaggttggttcttttgaatacaca
aaagaaactctacgggaattagaagctgaagcatataaacatatagaatcactaggtgga
aaccctcaacttgcatcattaattgagcaactaagcaaaatgtatcagtga
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