Xenopus tropicalis (tropical clawed frog): 734063
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Entry
734063 CDS
T01011
Symbol
pold1
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03030
DNA replication
xtr03410
Base excision repair
xtr03420
Nucleotide excision repair
xtr03430
Mismatch repair
xtr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
734063 (pold1)
03410 Base excision repair
734063 (pold1)
03420 Nucleotide excision repair
734063 (pold1)
03430 Mismatch repair
734063 (pold1)
03440 Homologous recombination
734063 (pold1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xtr03032
]
734063 (pold1)
03400 DNA repair and recombination proteins [BR:
xtr03400
]
734063 (pold1)
Enzymes [BR:
xtr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
734063 (pold1)
DNA replication proteins [BR:
xtr03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
734063 (pold1)
DNA repair and recombination proteins [BR:
xtr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
734063 (pold1)
MMR (mismatch excision repair)
DNA polymerase delta complex
734063 (pold1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
DNA_pol_B_2
Motif
Other DBs
NCBI-GeneID:
734063
NCBI-ProteinID:
NP_001039204
Xenbase:
XB-GENE-1002131
UniProt:
Q28C68
LinkDB
All DBs
Position
7:complement(117250270..117300387)
Genome browser
AA seq
1109 aa
AA seq
DB search
MDFKRKKGQASGLPASQTKKLRGDWDDDAPSQFEEELAFMDEVEAEMAMELSEGQLSADI
LPVGKLISDNIPPKWLRPPVSLTDPKEQTLCFQQVELDHYVGSHVSGMLGATQGPVPIIR
MFGITEEGNSVCCHIHGFAPYFYVPCHTGFKQEDLSDFKKELNSAVIKDMRSNKDSISQA
VLAVDVCHKENMYGYHGKKIIPFMKITMALPRLIAPAKRLLEQGLRFGRHPTHCYQAYEA
NIDFEIRFMVDNDIVGCNWIELPAGKYRLRKESQDEGPSKENPSKVSLAQIEVDISWADL
ISHPAEGDWQKIAPLRVLSFDIECAGRKGVFPEPDKDPVIQIANMVLRQGEKDAFIRNVF
TLGTCSSIVGSQVLCFDREDALLKAWADFVRTIDPDIITGYNIQNFDMPYLINRAQTLKV
PNFPFLGRIRSMKSVIRDSSFQSKQMGRRENKVINTEGRVQFDLLQVLLRDYKLRSYTLN
AVSFHFLQEQKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLMEKLMCVINYMEM
ARVTGVPLSYLLSRGQQIKVVSQLLRQAMKQDLVMPVVKSEGGEDYTGATVIEPLKGYYD
VPIATLDFSSLYPSIMMAHNLCYTTLLQSGSIDKYGLSPEDFIKTPTGDCFVKASIRKGL
LPEILENLLCARKRAKAELKKETDPFKQKVLDGRQLALKVSANSVYGFTGAQVGKLPCLE
ISQSVTGFGRQMIEKTKQLVESKYTLDNGYKADAKVIYGDTDSVMCKLGVQTVVEAMEIG
REAAEWVSSHFTPPIKLEFEKVYFPYLLINKKRYAGLYFSSSANTHDKMDCKGIETVRRD
NCPLVANLINTCLQKILIDRDPMGAVEHAKDVISDLLCNRIDISQLVITKELTRTADEYA
GKQAHVELAERMRKRDPGSAPNLGDRVPYVIIGAAKGVAAYMKSEDPIYVLENNIPIDTQ
YYLEQQLAKPLLRIFEPILGESKAESILLKGEHTRCKTVLTAKVGGLMAFAKKRSTCIGC
KATLNHDGAVCNYCKQRESELIQKEISQLSGLEEKFSRLWTQCQRCQGSLHEDVLCTSRD
CPIFYMRKKVQKDLDDQEKLILRFGPPAW
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atggatttcaaaagaaagaaagggcaggcatcaggcctccctgcttcacagaccaaaaaa
ctgagaggagactgggacgatgatgctccttcccagtttgaggaggaactggctttcatg
gatgaagtggaagcagaaatggctatggagctcagtgaagggcaactcagtgctgatatt
ctccctgttggaaaactcatctctgacaatatccctccaaaatggttaaggccgccggtt
tcgcttaccgaccccaaagagcagactctttgctttcaacaggttgaactggaccactat
gtgggaagtcatgtctcaggaatgctgggagcgacacagggacctgtccccatcattcgt
atgtttgggatcacagaagaaggaaacagtgtctgttgccatatccatggctttgcacct
tacttctatgtgccctgccatactggtttcaaacaggaggatttaagtgactttaagaag
gagttaaactcagctgtgattaaagacatgcgttccaacaaagacagcatctctcaggcc
gtcctggctgtagacgtctgccacaaagagaatatgtacggataccatgggaaaaagata
ataccatttatgaagattaccatggctcttccacgtttaatcgcgcctgcaaagcgtctc
ctggaacaaggcttgcggttcggaaggcaccccacacattgctaccaagcctatgaggca
aacattgattttgaaatcaggtttatggtggacaatgatattgttgggtgtaattggatc
gaactccctgcaggcaaataccgtttgcgtaaagaatcacaagatgaagggccttctaaa
gaaaatcctagcaaggtgtccctggctcagatagaggtggacatcagctgggctgatctg
atcagtcatcctgcagaaggggattggcagaaaatcgctcctctacgagttctaagcttt
gatattgaatgcgccggcaggaaaggtgttttccctgagcctgacaaggatccggtgatc
cagattgctaatatggtgctgcgccaaggagaaaaggatgccttcattcgcaatgtcttc
acgctgggcacttgctcaagcattgtgggttcccaggtgctctgctttgatcgggaagat
gcacttctcaaggcttgggccgattttgttcgcactatcgacccggatattattactgga
tacaacattcagaacttcgatatgccgtacctgatcaacagggcccagactctcaaggtc
cctaatttcccctttctcggtagaatccgatctatgaaatccgttatcagagattcttcc
ttccagtcgaaacagatgggccggcgggagaataaagtcattaatacagagggtcgggtt
cagtttgacttgctgcaggttctgctgcgagattataagctccgatcttatacattaaac
gctgtgagtttccatttcctgcaagaacagaaggaagatgtgcagcactccattattact
gacttacagaatggcaacgagcagacccgcaggcgactggcagtttactgcctgaaggat
gcctacttgccccttcggctcatggagaaacttatgtgcgtcatcaactacatggaaatg
gcgcgcgtgactggcgttcctctcagctacctgctgtctcgcggccagcagattaaagtg
gtgtctcagcttctaagacaggccatgaaacaagacctggtgatgcccgtggtcaagtca
gagggaggtgaagattacactggggctacagtcattgaacccctgaaagggtattatgat
gtgccaattgccactcttgatttctcgtctctgtatccatctattatgatggcccataat
ctctgctacaccactctgttgcagtctggatccatagataaatacggcctcagtcctgaa
gattttatcaagaccccaactggtgattgttttgttaaggcgagtataaggaaaggactg
cttcctgaaattctggaaaacttgttatgtgcccgaaaacgggcaaaggcagaactgaag
aaagagactgacccttttaagcaaaaggtgttggatgggcgtcagctggcactgaaagtc
agcgctaactctgtgtatggttttacaggagcacaggttggcaaactgccctgcttggag
atatcgcagagtgtcaccgggtttggcagacagatgatcgagaaaaccaagcaactggtt
gagtccaaatatactctggacaatggatataaggctgacgccaaggtgatctatggcgac
acggattctgtcatgtgcaaacttggggtgcagaccgtggtggaggccatggagatagga
agagaggcagcagaatgggtgtccagtcattttactcctccaataaaactggaatttgaa
aaggtttattttccctacctgttgatcaacaagaagcgatacgccgggctgtacttctca
tccagcgccaatactcatgataagatggactgcaaaggaatagagactgtgcgaagagac
aactgcccacttgtggccaatttgataaatacttgtctgcagaaaattctgattgaccgg
gatcctatgggagccgtggagcatgctaaagacgtgatctctgatttgctgtgcaatcgg
atagatatctcgcagcttgtgattacaaaggagttgacgcggacggctgatgagtacgca
gggaaacaggcccacgtggagcttgcagagaggatgagaaagcgtgaccctggcagcgcc
cctaatctgggagaccgagttccgtatgtgatcataggagctgcaaaaggagtggccgct
tatatgaagtctgaggaccccatttacgtgcttgagaataacatccctatcgacacccaa
tattatctggaacagcaacttgcaaaacctcttcttaggatttttgaacccattctgggt
gaatccaaggccgaaagtattcttctgaagggggagcacacacgctgcaagaccgtgctg
accgccaaggttgggggcctcatggcgtttgctaagaaacgcagcacgtgcattggctgc
aaagcaacactaaatcatgatggtgctgtgtgtaactactgcaagcagcgcgagtctgaa
cttatccagaaagagatctctcaactttcgggcctagaagagaaattttctcgtctttgg
acccagtgccagcggtgccagggcagcttacacgaggatgttctatgcacaagccgtgac
tgcccaatcttttacatgagaaagaaggtgcagaaagacctggatgaccaggagaagctg
atccttcgctttggacccccagcttggtag
DBGET
integrated database retrieval system
