Zalophus californianus (California sea lion): 113908266
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Entry
113908266 CDS
T07874
Symbol
POLR2A
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
zca
Zalophus californianus (California sea lion)
Pathway
zca03020
RNA polymerase
zca03420
Nucleotide excision repair
zca05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
113908266 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
113908266 (POLR2A)
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
113908266 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zca03021
]
113908266 (POLR2A)
03400 DNA repair and recombination proteins [BR:
zca03400
]
113908266 (POLR2A)
Enzymes [BR:
zca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
113908266 (POLR2A)
Transcription machinery [BR:
zca03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
113908266 (POLR2A)
DNA repair and recombination proteins [BR:
zca03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
113908266 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
113908266
NCBI-ProteinID:
XP_027424300
EnsemblRapid:
ENSZCAG00025019764
UniProt:
A0A6J2AXC2
LinkDB
All DBs
Position
16:2508228..2532246
Genome browser
AA seq
1970 aa
AA seq
DB search
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDP
RQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVD
SNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKG
HGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEP
RYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAA
HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVD
FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII
RDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS
TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD
TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHI
NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM
GHDVTRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKA
HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN
ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA
MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES
VEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR
EDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKL
VIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAI
AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLT
VFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMP
DFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI
IITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALER
ELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLM
EAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTG
MFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPG
YSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPT
SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY
SPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTS
PKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
5913 nt
NT seq
+upstream
nt +downstream
nt
atgcacgggggtggccccccctccggggacagcgcatgcccgctgcgcaccatcaagcga
gtgcagttcggagtcctcagtccggatgaactgaaacggatgtctgtgaccgagggcggc
atcaaataccccgagacgacggaggggggccgccccaagcttggggggctgatggaccca
aggcagggtgtgatcgagcggaccggccgctgccagacctgtgcaggaaatatgacagag
tgtcctggccacttcggccacattgagctggccaaacctgtgtttcacgtgggcttccta
gtgaagaccatgaaagtgttgcgctgcgtctgcttcttctgctccaagctgctcgtggac
tctaacaacccaaaaatcaaggacatcctggccaagtcaaaggggcagcccaagaagcgg
ctgacacacgtgtacgacctgtgcaagggcaagaacatctgcgagggcggggaggagatg
gacaacaagttcggagtggagcagccggagggcgacgaggatttgaccaaagagaagggc
catggcggctgtgggcggtaccagccccgcatccggcgctcgggcctggagctgtacgcg
gagtggaagcacgtcaatgaggactcccaggagaagaagatcctgctgagtcctgagcga
gtgcacgagatcttcaagcgcatctctgatgaggagtgtttcgtgctgggcatggagccc
cggtacgcgcggcccgagtggatgatcgtcactgtgctgcccgtgcccccgctctctgtg
cggcctgccgtggtgatgcagggctctgcccgcaaccaggatgacctgactcacaagctg
gcggacatcgtgaagatcaacaatcagctgcggcgcaatgagcagaacggcgcggcggcc
cacgtcattgccgaggacgtgaagcttctccagttccatgtggccaccatggtggacaat
gagctgcctggcttgccccgcgccatgcagaagtctgggcgccccctcaagtccctgaag
cagcggctgaagggcaaggaaggccgggtccgaggaaacctgatgggcaagcgggtggac
ttttcggcccgcaccgtcatcacccccgaccccaacctctccatcgaccaggtcggcgtg
cctcgctccatcgccgccaacatgacctttgcggagatcgtcacgcccttcaacattgac
aggctccaggagctggtgcgcaggggaaacagccagtacccaggggccaagtatatcatc
cgggacaatggcgatcgtatcgacctgcgtttccaccccaagcccagtgatcttcacttg
cagaccggctacaaggtggaacggcacatgtgcgacggcgacatcgtcatctttaatcgc
cagccgactttgcacaaaatgtccatgatggggcaccgggtccgcatcctcccctggtct
acttttcgtttaaatctgagtgtgacaactccgtacaacgcagactttgacggagatgag
atgaacttgcacctgccgcagtctctggagacgcgggcagagatccaggagctggccatg
gtgccgcgcatgattgtcaccccccagagcaaccgccctgtcatgggcatcgtgcaggac
acgctcacggcagtgcgcaaattcacgaagagagatgtcttcctggagcggggggaggtg
atgaacctcctgatgttcctgtccacgtgggatgggaaggtgccgcagccagccatcctg
aagccgcggcccctgtggacgggcaaacagatcttctccctcatcataccaggccacatc
aactgcatccgcacccacagcacccatcctgacgatgaggacagcggtccttacaaacac
atctctcccggggacaccaaggtggtggtggagaacggggagctgatcatgggcatcctg
tgtaagaagtctctgggcacgtcggctggctcgctggtccacatctcttacctggagatg
ggtcatgatgtcactcgcctcttctactccaacattcagaccgtcattaacaactggctt
ctcatcgagggtcataccattggcattggggactccatcgctgactctaagacctaccag
gacattcagaacaccattaagaaggccaagcaggatgtgatagaggttatcgagaaggct
cataacaatgagctggagcccaccccgggaaacactctgcggcagacctttgagaaccag
gtaaaccgcattctcaacgacgcccgagacaagaccggttcctctgcccagaagtccctg
tctgagtacaacaacttcaagtccatggtggtgtctggggccaaaggctccaagatcaac
atctcccaggttattgctgtcgtcgggcagcagaacgtggaagggaaacggatcccgttt
ggattcaagcaccggaccctgcctcatttcatcaaggacgactatgggcccgagagccga
ggttttgtggagaactcctacctggccggcctcacgcccaccgagttcttcttccacgcc
atggggggtcgcgagggcctcattgacacggccgtcaagactgccgagactgggtacatc
cagcggcgactcatcaagtccatggagtcggtgatggtgaagtacgacgccaccgtgcgc
aactccatcaaccaagtggtgcagctacggtatggtgaggacggcctggccggcgagagc
gtcgagttccagaacctggctaccctgaagccatccaacaaggcttttgagaagaagttc
cgcttcgactacaccaacgagagggccctgcggcgcactctgcaggaagacctggtgaag
gacgtgctgagcaacgcgcacattcagaacgagctggagcgggaatttgagaggatgcgt
gaggaccgggaggtgctcagggtcatcttcccaactggtgacagcaaggtggtcctcccc
tgtaacctgctgcgcatgatctggaacgctcagaaaatcttccacatcaacccccgcctg
ccctccgacctgcaccccatcaaggttgtagagggagtcaaggaattgagcaagaagctg
gtgattgtgaacggggatgaccctctgagccggcaagctcaggagaacgccacgcttctc
ttcaacatccacctgcgttccacactctgctcccgccgcatggccgaggagttccggctc
agcggggaggcctttgactggctgctcggagagatcgagtccaagttcaaccaggccatt
gcccatcccggggagatggtgggcgccctggctgcacagtcccttggagaacctgccacc
cagatgaccttgaacacctttcattatgctggtgtgtctgccaagaatgtgaccctgggt
gtgccccgcctcaaggagctcatcaacatttccaagaagccaaagacaccttcgcttact
gtcttcctgctgggccagtccgctcgagatgctgagagagccaaggacattctgtgccgt
ctggaacatacgacattgaggaaggtgaccgccaacacagccatctactatgaccccaat
ccccagagcacagtggtggcagaggatcaggagtgggtgaatgtctactacgagatgcct
gactttgacgtggcccggatctccccctggcttctgcgggtggagctggaccggaagcac
atgactgaccggaagctgaccatggagcagattgccgagaagatcaatgccggtttcggc
gatgacttgaactgcatctttaacgacgataacgctgagaagctggtgctccgaatccgc
atcatgaacagtgacgaaaacaagatgcaagaggaggaggaggtggtggacaagatggat
gacgacgtgttcctgcgctgcatcgagtccaacatgctgaccgatatgaccctgcagggc
atcgagcagatcagcaaggtgtacatgcacctgccgcagacggacaacaagaagaagatc
atcatcacggaggatggggagttcaaggccctgcaggagtggatcctggagacggacggt
gtgagcctgatgcgggtgctgagcgagaaggacgtggaccctgtgcgcactacgtccaat
gacatcgtggagatcttcacggtgctgggcatcgaagctgtgcggaaggctctggagcgg
gaactgtaccacgtcatctcctttgacggctcctatgtcaattaccgccacttggctctg
ctgtgtgacaccatgacctgtcgcggccacttgatggccatcacccgacatggggtcaac
cgccaggataccggccctctcatgaagtgctcctttgaggaaacagtggacgtgctgatg
gaagcagccgcccacggagagagcgaccccatgaagggggtgtcggagaacatcatgttg
ggccagctcgccccggccggcaccggctgcttcgacctgctgctcgacgcagagaagtgc
aagtacggcatggagatccccaccaacatccccggcttgggggccgccggacctactggc
atgttcttcggctcggcgcccagtcccatgggagggatttctccggccatgacgccctgg
aaccagggcgcaactccagcctatggcgcctggtcgcccagtgttgggagcggaatgacc
ccgggggcagccggcttctcccccagcgccgcctccgacgccagtggcttcagccctggg
tactcgcctgcgtggtctcccacgccgggctccccgggctcccccggcccctccagcccg
tacatcccctcaccaggtggtgcaatgtctcccagctactccccgacctcacctgcctat
gagcctcgctccccggggggctataccccgcagagtccctcctactcccccacctcgccc
tcctactctcccacctcgccctcctactctccaactagtcccaattacagccccacatca
cccagctactccccgacctcgcccagctactccccgacctcgcccagctactccccgacc
tcgcccagctactccccgacctcgcccagctactccccgacttccccgagctactcgccc
acttctcccagctactccccgacctctcccagctactccccgacctctcccagctactcc
cccacctctcccagctactcgcccacctcgcccagctactcgcccacatcgcccagctac
tcgcccacgtccccaagctactcccccacgtccccaagctactccccgacatccccgagc
tactcaccaaccagccctaactattctccaaccagtcccaattacaccccgacgtcaccc
agctatagcccgacatcacccagctactccccgactagtcccaactacacgcccacgagc
cctaactatagcccgacctctccaagttactctccaacttcacccagctactccccaacc
tcaccaagctactccccatcaagcccacgatacacaccacagtctccaacctataccccg
agctcccccagctacagccccagctcccccagctacagcccaacctcgccgaagtacacc
cccaccagtccctcctacagccccagctccccagagtacaccccgacctcccccaagtac
tcacccaccagcccaaaatactcacccacctcccccaagtactcgcccaccagccccacc
tactcacccaccaccccaaaatactccccaacgtctcctacttattcgccaacctctccc
gtctatacccccacctcccccaagtactcgcccaccagccccacctactcgcccacctcc
cccaagtactcacccaccagccccacctactcgcccacctcccccaaaggctctacctac
tcccccacttcccctggctattcccccaccagccccacctacagcctcaccagtccggcc
atcagcccggacgacagtgatgaggagaactga
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integrated database retrieval system
