KEGG   Ziziphus jujuba (Chinese jujube): 107424459
Entry
107424459         CDS       T04794                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03020  RNA polymerase
zju03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    107424459
  09124 Replication and repair
   03420 Nucleotide excision repair
    107424459
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:zju03021]
    107424459
   03400 DNA repair and recombination proteins [BR:zju03400]
    107424459
Enzymes [BR:zju01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     107424459
Transcription machinery [BR:zju03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     107424459
DNA repair and recombination proteins [BR:zju03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      107424459
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R TACC_C
Other DBs
NCBI-GeneID: 107424459
NCBI-ProteinID: XP_015889758
UniProt: A0A6P4AUJ1
LinkDB
Position
7:complement(join(9067768..9067879,9067994..9068047,9068702..9068773,9069018..9072121,9072218..9072476,9072852..9073138,9073240..9073575,9073661..9073802,9073886..9074106,9074180..9074341,9074488..9074646,9074739..9075038,9075610..9075873,9076131..9076214))
AA seq 1851 aa
MDIRFPFSPAEIAKVRMVQFGILSPDEIRQMSVLQIEHSETMMGGKPKPAGLSDPRLGTI
DRKIKCDTCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILVDEEDHK
FKQALRIKNPKNRLKKILDACKNKTKCEGGDEIAVQGQESEEPVKKSRGGCGAQQPKFSI
DGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCELLGLDPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCVVSPQSNRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQIN
LNRTSSWHSESETGHITPGDTFVRIEKGELLFGTLCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMEKINETITKAKNDVKELIRKAQARDL
EAEPGRTMMESFENKVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK
LDSLKMKKTEFDRVFKYEFDDENWNPNYMMPEHIDDLKTIREFRNVFDAEVQKLDTDRFQ
LGTEIATTGDNSWPLPVNLKRLIQNAQKTFKIDYRRTSDMHPMEIVEAIDKLQERLKVVP
GDDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
PEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPTSTLIEEDVDFVRSYYEMPDEEI
NPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NDESPKGDMNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNGKVNKFDEIEGFKP
ETEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAERDY
LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMDGLDFGMTPSRSPVSGTP
YHEGLMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN
PQSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYN
SGVSPDYSPSSPQYSPSAGYSPSQPGYSPSSTSQYTPQTSEKDDKDDRSTR
NT seq 5556 nt   +upstreamnt  +downstreamnt
atggatataagatttccattctcgccggcggagatcgccaaagtccggatggttcagttc
ggcatactcagtcccgacgagattagacaaatgtcggtattacagattgagcacagtgag
actatgatggggggtaagccgaagcctgctggtctgagcgacccccggcttggtacaatt
gataggaagataaagtgcgatacttgcacagcgaacatggctgagtgcccgggtcacttt
ggtcacctcgagcttgccaagccaatgttccatatcgggtttatgaagactgtgcttagc
ataatgcgttgtgtttgcttcaattgctctaaaattcttgttgatgaggaagaccacaag
tttaagcaagctttgagaattaagaacccaaaaaataggctaaaaaagattttggatgct
tgcaagaacaaaacaaaatgtgaaggtggtgatgaaattgctgtccaaggtcaagaatct
gaagaacctgtgaagaaaagtcggggtggctgtggtgctcagcagccaaagttctctata
gatggtatgaaaatgattgcagagtacaaagctcaaaggaaaaaaagcgatgaccaggaa
cagcttcctgaacctgtggaaaggaaacaaacacttactgcagaaagggttcttagtgtt
ttgaagaggataagtgatgaggattgtgaacttttaggcttagatcccaagtatgcccgc
ccagattggatgattctgcaagtccttccaattcctccacctcccgtgaggccttcagta
atgatggatacatcctcgaggagtgaggatgatttaacacatcagttggcaatgatcata
aggcataatgagaacctgaggagacaggagagaaatgggtcacctgctcatatcatctcg
gagtttgcacagctgttgcagttccatattgccacatattttgacaatgagttgccgggg
ctgcctagggctacacaaagatcaggaaggcctattaaatcaatatgcagtagacttaaa
gcaaaagaaggccggattagagggaacttgatggggaaacgagttgatttttctgcacga
acagttattacacctgaccctaccattaacattgatgaattgggagttccatggagtatt
gctttaaatctcacatatccagagacagtgactccctacaacattgaaaggttgaaggag
cttgttgagtatgggccccaccccccacctggtaaaactggtgccaagtatatcataagg
gatgatggacaaaggcttgatcttcgttacttgaagaaaagtagtgatcatcatttggag
ctaggatacaaggtggagcgccatttgaatgatggggactttgtcctcttcaatcgtcaa
cctagtctgcataaaatgtctattatggggcatagaatcaagatcatgccttattcgact
ttccgtctgaatttatctgtcacttcgccttacaatgctgatttcgatggtgatgaaatg
aacatgcatgttcctcagtctttcgaaactagggctgaagtattggagctcatgatggtg
cccaaatgcgttgtgtcccctcagtcaaatcgacctgtaatgggaatagttcaggataca
ctattaggttgtcgtaagatcacaaagagggatactttcatagagaaggacgtttttatg
aacatcttgatgtggtgggaggactttgatggaaaagttcctgctcctgcaattttaaag
cctcagcctctttggacaggaaaacaagtttttaatcttattattccaaagcagataaat
cttaatagaacttcttcctggcactcagagtcagaaactggacatataactccaggggat
acttttgttagaatagaaaagggagaacttctttttgggactctttgcaagaagacacta
gggacatctacaggaagtcttatacatgtcatatgggaagaagttggtccagatgcagcc
cgcaaatttctgggtcatacacagtggcttgttaattactggcttctgcagaatgctttt
agcattggaattggagatacaattgctgatgcatcaaccatggaaaaaattaatgaaacc
attaccaaggcaaaaaatgatgtgaaagaacttatcaggaaagcccaagcaagggaccta
gaagctgaacctggacgaaccatgatggaatcttttgaaaacaaagtgaatcaggtgttg
aatagggctcgtgatgatgctggaagtagtgcccaaaaaagtttatctgagagtaacaat
cttaaggctatggttactgcaggatctaaaggcagtttcattaacatctcacagatgact
gcttgtgtggggcagcaaaatgttgagggtaagcgaatcccatatgggttcatagatcgg
acattaccccactttaccaaagatgactatgggccagaaagtcgtggcttcgtagagaac
tcatacctgcgaggactgaccccacaggagttcttttttcatgcaatgggtggtagggaa
ggtcttatagatactgcagtgaagacttctgaaactggatacatccagaggagactggtg
aaggctatggaggatattatggtcaaatatgacgggactgtaaggaattcattaggggat
gtcattcaatttctttatggggaagatggaatggattctgtttggatagaatcccaaaaa
ctggattctttgaaaatgaaaaaaacagaatttgatagggttttcaagtatgagtttgat
gatgaaaattggaatccaaattacatgatgccagaacatattgatgatctgaaaaccatc
agagagttccgcaatgtgtttgatgctgaagttcaaaaacttgataccgatagatttcaa
ctgggaacagaaattgcaaccacaggtgataattcatggcctttgcctgttaacttgaag
aggcttatccagaacgcacaaaagactttcaagattgattaccgcaggacatctgatatg
catccaatggaaatagtcgaagctattgataagcttcaggagaggctgaaagttgttcct
ggtgacgacttgttgagtgtagaagctcaaaagaatgctacactcttcttcaacattttg
cttcgaagcacttttgctagcaaaagggtgctggaagagtataggctcactcgtgaagca
tttgaatgggttattggtgagatagagtcacgcttcttacaatcactggtagcacctgga
gaaatgattggatgtgttgctgcacaatctattggtgaacctgccactcagatgactctt
aataccttccactatgctggtgtgagtgcaaagaatgtgacacttggtgttcccaggttg
cgagaaatcattaatgtggctaaaaggattaaaacaccatctctctctgtctacttaaaa
cctgaagctaataaaacgaaggagagagccaaaaatgttcagtgtgctttggaatacacc
actctgcggagtgtaactcaagctacagaagtatggtatgatccggatcccacaagcaca
ctgatagaggaggatgttgattttgtcagatcttactatgaaatgccagatgaagagatc
aaccctgacaaaatttctccctggttgcttcgcatagagttgaatcgtgaaatgatggtg
gataagaagttaagcatggccgacattgctgagaagatcaaccttgaatttgatgatgat
ttgacttgcatattcaatgatgataatgctgaaaaacttatccttcgaattcgtatcatg
aatgatgagtctccaaaaggggacatgaatgatgagtctgctgaagatgatgttttcttg
aagaagattgagagtaacatgctgacagaaatggcactccgtggtattccagatattaac
aaggtgtttataaagaacggtaaagtaaacaaatttgatgagattgagggatttaaacca
gagactgagtggatgctggatacagaaggagttaatcttttagctgtcatgtgccatgaa
gatgttgatgcaaggaggacaacaagtaatcacttgattgaagttattgaggttcttgga
attgaggcggttcgtcgctcactattggatgaattgcgtgttgttatatcttttgatgga
tcatatgtgaactaccggcatctggctatcctttgtgacaccatgacctatcgtggccac
ttgatggccattactcgtcatggtattaatcggaatgacactggaccaatgatgcgatgc
tcatttgaagaaactgtggacattcttctcgatgctgcggtgtatgctgaaagagattac
ttgaggggtgtaactgagaatattatgttaggtcagcttgcaccaattggcacaggagat
tgttctctttatctcaatgatgagatgttgaagaatgctattgaactccagctacctagt
tacatggatggtcttgattttggcatgacaccatctcgttctccagtctcgggaactcca
tatcatgagggtttgatgtccccgagctatctattgagtccaaatcttcgtttgtcaccc
atctcagatgcccaattttctccatatgttggaggaatggccttttctcctacttcctct
cctggctatagtccatcatcgccaggctacagtccatcatctcccggatatagtcctact
tctcctggttatagccctacatcacctggctacagtcccacctctcctggctatagtccc
acttccccaacctatagtcctagttcaccgggttatagtccaacaagtcctgcctattct
cctactagtccatcgtattctcccacctcacccagttatagtccaacctctccgagctac
agtccaacatctcccagttacagccccacatctcctagttacagccccacatctccaagt
tatagtccgacatctcctgcatacagcccaacttcgcctgcatatagtccaacttcccct
gcatatagtcctacatcaccatcctatagccctacttctccttcatacagcccaacatca
ccttcgtacagtcccacatctccgtcttacagccccacatctccatcttatagccctaca
tctccgtcttacagccctacctcgccagcctatagtcccacttctcctggttatagtcca
acttcaccaagttatagcccaacctcacccagctacagcccgacatctccaagttacaac
cctcaatcggcaaaatacagcccttcactggcatattctccaagcagtccaagattatcc
ccatctagcccttatagtcctacatctccaaattatagcccaacttcaccatcatattca
cccacatctccatcttattctccttcaagccccacgtacagccccagcagcccatataac
tctggagtaagcccggattatagcccaagttctccgcaatatagtccaagtgcagggtac
tcgcccagtcaaccagggtactcaccgtcatcaaccagccaatataccccacaaacaagt
gagaaagatgataaagatgaccggagtactcgctga

DBGET integrated database retrieval system