Zonotrichia leucophrys gambelii (white-crowned sparrow): 135450787
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Entry
135450787 CDS
T09958
Symbol
VCAM1
Name
(RefSeq) vascular cell adhesion protein 1 isoform X1
KO
K06527
vascular cell adhesion molecule 1
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
135450787 (VCAM1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
zle04090
]
135450787 (VCAM1)
04091 Lectins [BR:
zle04091
]
135450787 (VCAM1)
CD molecules [BR:
zle04090
]
Proteins
135450787 (VCAM1)
Lectins [BR:
zle04091
]
I-type lectins (Siglecs)
135450787 (VCAM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
V-set
C2-set_2
C2-set
Ig_6
Ig_4
C1-set
Ig_C17orf99
ICAM_N
ICAM1_3_5_D2
V-set_CD47
DUF2808
Cobl
Motif
Other DBs
NCBI-GeneID:
135450787
NCBI-ProteinID:
XP_064575327
LinkDB
All DBs
Position
8:12046734..12092978
Genome browser
AA seq
555 aa
AA seq
DB search
MNKGVAELLLQQQLQMLKEMGRASQAVLLILCVLRTVKAFEMEIIPAERIVAQIGGTLIL
TCNTTGCASPSFSWRTQMDSPLGGKVSNHRTYSTLTMNPVGVVNSHSYLCTVICGERGKK
EKSVKVELYSFPSDPIIDISPSLVAGEPAPVICKIPDVYPSHHLEVLLKKDGQVLHEEYF
LYDDSTNTETKTVTYTFHPMAEDAGKEITCVARLPIADMDFEPKERTSSQKLNVNFGPQN
TVITASPSNSPMAGDSLNLTCVTQSNPPAQIVWSKYLAEESIQHVIKNNVLSISRVHFND
SGRYICEAINLVTNKTEEATVNIVIQGAPVITKLSIEPSTTVQEGQNVSIQCSAESNPPP
KIILRRKSDNADIGTSSARSIFLPSVMFQNGGDYECVAENKYGNSKSEITLNVKYGPKNT
VITVFPAALKEGETVTMKCTSSGNPAPVISWKKKKATGEFEKISKNATITIQNLKSQDLG
LYECEAYNQYGKEEKAVELYVQARLEEPDQMIPFIIAFSSVAAVAVPAAAILIYVSRQAK
INGSYSLVKALRLKV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagggtgttgcagagctgctgctgcaacagcaattgcaaatgttaaaggagatg
ggaagagcaagccaagctgtgctattaattttgtgcgtgttaaggactgttaaagctttt
gaaatggaaattatacctgctgagagaattgtggcacagattggaggcacactcatactc
acatgcaataccactggctgtgcatcaccaagtttttcctggagaacccagatggacagc
ccccttggaggaaaagtcagcaaccacaggacatattctacattgactatgaatccagtt
ggtgttgtgaattctcattcttatctttgtactgtcatatgtggtgagagagggaaaaag
gagaagagtgtcaaagttgaactttactctttccccagtgatcctatcattgacatcagc
ccatccttagttgctggagaaccagcccctgtcatctgtaaaattcctgatgtatatcct
tctcatcacctggaagttctcctaaagaaagatggacaggttcttcatgaggaatatttt
ttgtacgatgacagcacaaatacagagaccaaaactgtgacatatacatttcatcccatg
gctgaagatgctgggaaagagattacctgtgtggccaggttaccaattgctgatatggat
tttgaacccaaagaaagaacatcttctcagaaacttaatgtaaattttggtccacaaaat
actgtcattactgcatctccaagcaactcaccaatggcaggagactctctgaacctcact
tgtgtgactcagagtaacccaccagcacaaatagtttggagtaaatatttggctgaagaa
agcattcaacatgtgataaaaaacaatgttctttctatttcccgtgtccatttcaatgat
tcaggacggtacatctgtgaagcaattaatctggtaactaataaaacagaggaagcaact
gtgaacattgttatacaaggtgctccagtcattacaaaactctccattgaaccttctaca
acagttcaggaagggcaaaatgtctccatacaatgttctgctgaaagcaaccctcctccc
aagataattctaaggagaaaatctgacaatgcagacatagggacttctagtgccagaagt
atttttcttccatctgtgatgttccaaaatggaggagactatgaatgtgtagcagaaaat
aagtatgggaacagtaaaagtgaaatcacacttaatgtgaaatatggaccaaagaataca
gtgatcactgttttccctgctgctcttaaagaaggggaaactgtgacaatgaaatgtact
agttctggtaatccagctcctgtgatctcctggaagaaaaagaaggccaccggggagttt
gagaaaatttctaaaaatgcaactataactatacagaacttgaaaagtcaagatctgggg
ctttatgaatgtgaagcttataatcaatatggcaaggaagaaaaagctgtggaattatat
gttcaagcaagattggaagaaccagatcagatgatcccattcattattgcattctcatct
gtagcagcagtagcagttcctgcagctgccattttgatctacgtgtcaagacaagcaaag
atcaatggatcctacagtcttgtaaaagcactcaggttgaaagtttga
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