Zea mays (maize): 100279825
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Entry
100279825 CDS
T01088
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
zma
Zea mays (maize)
Pathway
zma03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100279825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zma03021
]
100279825
Enzymes [BR:
zma01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
100279825
Transcription machinery [BR:
zma03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
100279825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpa2_4
DUF6742
Motif
Other DBs
NCBI-GeneID:
100279825
NCBI-ProteinID:
XP_008655367
UniProt:
A0A1D6K232
LinkDB
All DBs
Position
1:complement(55829055..55850773)
Genome browser
AA seq
1690 aa
AA seq
DB search
MADGQHIQAASEEVDSIHFSFYSDDEIKRISIKKITKSERLDAKNLPVPGGLLDPAMGPI
NDIDICKSCGQHSVRCPGHFGHIELAKPLFNPLLFMSLKNLLHVTCFHCHKFRLNKEQVD
RYVNELELLVKGDIVCAKNLEDSVEEAYLSKEDENMNKTTSGDNSSSVKDKKTWTSIQLK
EVLSIFSKIMKKRQKKCAKCDMKSPTISSPIFGWLVKDTKASAVRTNAIADFKLKGDGDI
HNSGETGVSGLEEESSSPGMVSKDSINEVRGLSDDTIKELVASSGKKHLLPTEVESILKD
LWKNEARFCMLLCDFQKNMSSEPEKRRGYEMFFLSSLLVAPNRFRPSTSSSLGIMEHPQS
VLLSKVQESNLALQHNNASSNHMDVLQRWMDLQRSVNVLYDSSKGLARSEKNAHGIRQLL
EKKEGILRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPVFATRLTYPEKVTPWNTKRLQ
EAIRNGADIHPGATHYRDNNSMYKLQAVPAKRRSIAKMLPASRGSICQPGRDPNCEFESK
VVYRHLQDGDIVLVNRQPTLHKPSMMAHFVRVLPGEKTLRMHYANCSTYNADFDGDEMNV
HVPQDEISRAEAMNIVDANKQYIGPRSGDAVRGLIQDHIVGAVLLTKPDTLLSREEYSQL
VFGSCVPSSNCGSHHPAKVSAIEDYDTLELVHPAIWKPRPLWTGKQVITTILNHLTKGCP
PFTVEQKGKIPKEYLKEDPSAQKEKEDPSARKEAHSAKKGKREDPSAQKEKDSSVNKEKQ
EKIQKQKQKDRSELVLYIHNNELIKGIIDKAQFGKYGIVHTVHELYGAYTAGILLSTFSR
LFTLFLQLHGFTCGVDDLLLLPEKDKLRSKILSGSEVRSNEVHWKFTGADEDHKGDLVKL
HMEVEKAVRSNGESDTATLDNDMKNALNGITTDVNKILFPDGLQKPFPGNCLSLMTTTGA
KGGPVNMNQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDISSRAGGFISDRFLTGLRPQ
EYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKCLESLKVSYDHTVRDADGSIVQFCYGED
GVDVLKTSFLNEFKELADNRKAVLAKLGGCSKDPTLSKCNGYITELPPKLIDKAEEFLKH
SKECCRYNIEAKELKELLKVKFLSSLVDPGEAVGVVAAQSIGEPSTQMTLNTFHLAGRGD
MNVTLGIPRLKEILMTASDNIRTPVMKCPLLEHISEDDAKMVVAKLRRVRVADVVEKIEV
CTVPFYNSNGRVSTLYKLQMKLYPQDQLESGLTIDECQATLRTVFVEAMEHAIEKHLDLL
YKINEIRAVKIEDTEGSLLNGDEESQSRHADGGDTGTSDDDDQNDNDVDLGTDAEKMKRQ
EKDEMEYDDDTETEEGMGSESEESDEDPAESGDDSQEADKEHTISKSETTSVDDLPYSVK
KGKKSKDDRGTAKLEEKNQNEGRLDDQKQGQIKKRRKKLKHTIHVESSDLDFEIHYAFHD
EPHILLAQIAKKIARTILVKACNNIDHCKIVKPMHNHTRLETAGVNFEVVWNLSEYISVN
DITSNDIHAMLKTYGVEAARGTIIKEVSGVFEPYGINVDMRHLSLIADFMTLDGGYRPMN
RLGIGQFSTSPFGKMTFETATKFIVDAATHGEADFLECPSASVCLGKPPKVGTGIFGLLQ
NLELEQPKNI
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgggcagcatattcaggcagcatcagaggaagtggattcaatccacttcagc
ttctatagtgatgatgaaattaagaggatcagcattaaaaagatcaccaagtcggagcgc
cttgatgccaaaaaccttcctgtgccaggtggattactggaccctgcaatgggacctatc
aatgatattgatatctgcaagagttgtggtcagcattctgttcgttgccctggtcacttc
ggtcatattgagttggcaaaaccattgttcaatcctttgctgtttatgagtctgaaaaac
cttctccatgtcacgtgtttccattgtcacaagttccgcctgaacaaggaacaggttgac
agatatgtgaatgaacttgaacttttagtaaagggtgatattgtctgtgctaaaaatttg
gaagactcagtagaagaagcatatctttccaaggaagatgaaaacatgaacaagaccact
tcaggtgataactcatcttctgtgaaagacaagaaaacctggacatctatccaattgaaa
gaggttttgtctattttttccaagataatgaaaaagagacagaagaagtgtgcaaaatgt
gacatgaagagcccaacaatctcaagtcctatatttggttggctggtcaaggacacaaag
gcttctgctgtaagaacaaatgcaattgctgattttaaactcaagggagatggtgatatt
cacaactcaggggaaacaggggtttctggtcttgaggaagagtcatcttcacctggaatg
gtgtctaaagactcaatcaatgaagttagaggtctttctgatgatacaattaaagaattg
gtagcatcatcaggaaaaaaacatctattgcctacagaggttgaatctattctcaaggac
ttgtggaaaaatgaagctaggttctgcatgttactttgtgatttccagaagaatatgtca
agtgaaccagaaaagagaaggggctatgaaatgttcttcttgagtagtctccttgtggca
ccaaatagattccgcccatcaactagctctagtcttggaattatggaacatcctcaaagt
gttctgctaagtaaagtgcaagaatccaatcttgcgctacaacataacaatgcatcttct
aaccatatggatgttcttcaaagatggatggatctacaacggagtgtaaatgtgctatat
gatagtagcaaaggccttgcaagaagcgagaagaatgctcatggtatacgccagctattg
gaaaagaaagaaggaattcttcgacaaaagatgatggggaagagggttaattatgcatgc
cgatctgttatatctccagatccgtacttggctgttaatgaaattggcattcctcctgtt
tttgcgacacgattgacatatcctgagaaagtaacaccctggaataccaaaaggctccaa
gaagctataaggaatggtgccgatatacatccaggtgcaacacattacagggacaacaat
agcatgtataagttacaggcagtccctgccaaacgccgttccattgctaagatgctacct
gcatctagaggatcaatttgtcagccagggagagatcctaattgtgagtttgaaagcaag
gttgtatatcggcatcttcaagatggtgacattgtacttgtcaataggcagcctactctt
cacaagcccagcatgatggctcattttgttcgggtgttacctggagaaaagacgttacga
atgcactacgccaattgcagcacctacaatgctgattttgacggagatgagatgaatgtt
catgttccgcaagatgaaatatctcgtgctgaggccatgaatattgttgacgcaaacaag
caatacattggtcctaggagtggggatgctgtcagaggtctcatacaggaccacattgtt
ggtgctgtactattgacaaaaccagacacattgctaagccgtgaagaatatagtcagctt
gtctttgggtcttgtgtgccgtcctcaaattgtggctctcatcaccctgctaaggtgtct
gctattgaggattacgatacacttgaacttgtccatcctgctatttggaagccaaggccc
ttatggacaggaaaacaggttataacaaccatcttgaatcatttaacaaaaggttgtcct
ccatttactgtggagcagaagggaaaaataccaaaagaatatctgaaagaagatccttcc
gctcaaaaggaaaaagaagatccttccgctcgaaaagaagctcattctgctaaaaaagga
aaacgagaagatccttccgctcaaaaagaaaaagattcttcagttaataaagaaaaacaa
gagaagatacaaaaacaaaaacaaaaagatcgttctgaactggtcttatatattcacaat
aatgagctcataaagggcataatagacaaggcccagtttgggaagtatgggatagttcat
acagttcatgaactctatggtgcatatacagctgggatactgctctcgacattcagccgc
ttatttacactgttcttgcagttgcatgggtttacttgtggggtagatgacctgctacta
ttgccagagaaggataaactgagaagtaaaattcttagtggaagcgaagtgcgtagtaat
gaagtccactggaaatttactggagctgacgaagatcataaaggtgatctggtaaaattg
catatggaggttgagaaggctgtaagaagtaacggtgaatcggacacggctaccttggac
aatgatatgaaaaatgctctaaatgggataacaaccgacgtcaataaaatattatttcct
gatggtctacaaaagccctttcctggaaattgtctctctcttatgactacaactggagct
aaaggtggtccggttaacatgaatcaaatatcatcattactaggccagcaagagctagaa
ggaaagcgtgttccacggatggtttctgggaagactttaccgtgctttccgccatgggat
atttcttcaagagctggtggctttatcagtgatcgatttttaactggtctgcgtcctcaa
gagtattactttcactgtatggcaggcagagaggggttggttgacacagcagtcaaaaca
tcccgtagtggataccttcagcgttgtcttatcaaatgtctggaatcgttgaaagtctcc
tatgatcacacggttcgggatgctgatggatcaattgtacagttctgctatggagaagat
ggagttgatgtgctgaaaactagctttctgaacgagttcaaagaacttgctgataacaga
aaagctgtccttgccaagctcggtggctgcagtaaggatcccacattatcaaaatgtaat
ggatacattactgaactgcctcctaaattgattgataaagcggaagagtttcttaagcat
tcaaaggaatgctgtcgttacaacattgaggcaaaggaattaaaggagttacttaaagtc
aagttcctatccagtcttgtagatcctggtgaggctgttggtgtggttgctgctcagtca
ataggagaaccttctacgcagatgacgctcaacacttttcatcttgctggaaggggtgac
atgaatgtaactcttggtataccccggctgaaagaaatactgatgactgcatcagataat
attaggacgcctgttatgaagtgtcctttgctcgaacatatttctgaggatgatgctaaa
atggtggttgcaaagcttaggagggttcgtgtggctgatgtagtggagaaaattgaagtc
tgcacagttcctttttacaactctaatgggcgtgtttcaaccctgtacaagttacagatg
aaactctatccacaagaccagcttgagtcaggtcttactatagatgagtgtcaggcaacc
ttgagaacagtttttgttgaggcaatggaacatgcaattgaaaagcatctagatctgcta
tacaaaataaatgaaatccgtgctgttaagatagaagatacagagggctcattattaaat
ggtgatgaagaatctcaaagtagacatgctgatggaggagacactggtactagtgatgat
gacgatcaaaatgataatgatgttgacttgggaactgatgcagaaaagatgaaacggcaa
gagaaagatgagatggagtatgatgatgatactgaaaccgaggagggaatgggtagcgaa
tctgaggagagcgatgaggatccagctgagtcaggtgatgattcacaagaggctgacaaa
gaacacacgatctcgaagtctgagacgacttcagtggatgacctgccatattctgtaaaa
aaggggaaaaaatcaaaagatgatcgtggaacagctaaactagaagagaaaaatcaaaat
gagggaagattagatgaccagaaacagggtcaaataaagaagcgcaggaaaaagttaaaa
catactatccatgttgaatccagtgatttggattttgagattcactatgcctttcatgat
gaacctcatattttactagctcagattgccaaaaagatagctaggactattcttgtgaag
gcctgcaataacattgatcattgtaagatcgtcaagccaatgcacaaccatacgcgtcta
gagaccgccggagtgaactttgaagtggtatggaatctcagtgaatacatcagcgtcaat
gacatcacatcaaatgatatccatgccatgctgaagacatacggggtggaggccgcacgg
ggcaccatcatcaaggaagtgagcggcgtgtttgaaccctatggcatcaatgttgacatg
aggcacctgagcctgatcgcagactttatgaccttggatggcggataccggcctatgaac
aggctggggattggccagttcagcacctcgccatttggcaagatgacgttcgagacagca
acaaagttcattgtggatgcagccacacatggggaggcagattttctggagtgcccctca
gcgagtgtctgccttgggaagcccccgaaggttgggactgggatctttgggctactgcag
aatcttgaattggagcagcccaagaatatctaa
DBGET
integrated database retrieval system
