Zea mays (maize): 542626 Help Entry 542626            CDS       T01088                                  Name (RefSeq) DNA mismatch repair protein MSH6   KO K08737   DNA mismatch repair protein MSH6 Organism zma  Zea mays (maize) Pathway zma03430   Mismatch repair Brite KEGG Orthology (KO) [BR:zma00001]  09120 Genetic Information Processing   09124 Replication and repair    03430 Mismatch repair     542626  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:zma03400]     542626 DNA repair and recombination proteins [BR:zma03400]  Eukaryotic type   SSBR (single strand breaks repair)    MMR (mismatch excision repair)     Mismatch and loop recognition factors      542626 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  MutS_V MutS_III MutS_I MutS_IV MutS_II PTM_DIR17_Tudor LBR_tudor Cadherin_2 AAA_22 Motif Other DBs NCBI-GeneID:  542626 NCBI-ProteinID:  XP_020396805 LinkDB All DBs Position 7:114604555..114614922 Genome browser AA seq 1296 aa AA seqDB search MASRRASNGRSPLVRKQSQITAFFSSPTPSPSPSGPSPGASKPSPSPLNPSARTRSPLAA VSPSSPKLPQPQQKQKEVKKVKEEHDAALVPAPAAAEVVGRCLRVYWPLDDAWYKGKVEA YDAASRRHRVKYDDGDEEEVDLRKEKFEWAAVVEESTLLPARKLRRLRRMSDISVAKSPA EAEDGAGDSTEDEDWKRDTVVEDASEEVELDEEDEEEVVAVRSRKRNPKNSLMSGSTPST LGSGLTSESEPRISKRRKNVDVASLDFAKRFTFEAVNTNRKVDPEVPMSCGQKGQTTGND YTAPTGDAAERFGQRDAEKFKFLGEGRKDAKGRRPGNPGFDPRTLLLPPQFLKNLTGGQR QWWEFKSQHMDKVLFFKMGKFYELFEMDAHVGAKDLDLQYMKGEQPHCGFPEKNLSVNLE KLAEKGYRVLVVEQTETPDQLELRRKEMGIKDKVVRREICAVVTKGTLIEGEHLLANPDP SYLLSVTESYQRSPNKSQDTCTIGVSIVDVSTSKFIVGQFQDDPERHGLCSILSEMRPVE IIKPSKMLSPETEKALNNNTRKPLINELVPSTEFWDAEKTIDEIKQYYSSANKQKKADDI QDCVDCLPNLLRELIGAGDKTYALSALGGSLFYLRQTLLDEKILPCAEFEPLACSGFINN IRKHMILDTAALENLELLENTRTGGLSGTLYAQLNHCVTGFGKRLLKRWIAKPLYDRREI LRRQSAVATFKGVGQDCAAQFRKDLSRLPDMERLLARLFSSCDENKRSSSVVLYEDASKK LLQQFTSALCGCQQMFHACSSISTLICSEGSQLIDLLSPGKGLSNISSILDRFRDAFDWS EADRNGRIIPSEGCDPEYDATCNAIEEIKSSLKEYLKEQRKLLRPASVNYVNVGKDMYLI EVPESLGGSVPRNYELQSTKKGFYRYWTPELKELILELSKAESEKESKLKAILQNLIQLF VEHHTEWRQLVSVVAELDVLTSLAIASGYFEGPSCCPTIKESNGTDDTPTFHARNLGHPI LRSDSLGKGSFVPNDVKIGGPGNASFIVLTGPNMGGKSTLLRQVCLTIILAQIGADVPAE KLELSLVDRIFVRMGARDHIMAGQSTFLVELEETASVLSSATKNSLVVLDELGRGTSTSD GQAIAASVLEYLVHQVQCLGLFSTHYHRLAMEHNDTKVSLCHMACEVVEGVGGLEEVTFL YRLTPGACPKSYGVNVARLAGIPTKLLQRANEKSSEFEANYGKRHKMTNDKHVSAQSDDK FSAIRDLFRIVKTWPRPEDQEASISMLRKLQKRAKV NT seq 3891 nt NT seq  +upstreamnt  +downstreamnt atggcgtcgcgccgagccagcaacggccgctctcccctcgtgcggaaacagagtcagatc accgcctttttctcctcccctaccccctctccgtccccctcgggcccgagccccggcgca tccaagccctctccatcgccgctgaaccctagtgcgaggacgaggtccccacttgccgcg gtatccccctcctctcccaagctgccacagccgcagcagaaacagaaggaggtaaagaag gttaaggaggagcatgatgccgccttggtgcctgcgcccgcggccgcggaggtggtgggg aggtgtttgcgggtgtactggccgctggacgacgcgtggtacaagggcaaggtggaggcc tacgacgcggcctcccgcaggcaccgcgtgaagtatgacgacggcgacgaggaggaggtc gatctcaggaaggagaagttcgagtgggccgccgtcgttgaggagtcgaccttgctgccg gcgaggaagctgcggcgtctccggcggatgtctgatatctcggtggcaaaatcaccggct gaggcagaggatggcgcaggggattccactgaggacgaggactggaagagggatactgtt gtggaggatgcttctgaggaggtggagctggatgaggaagacgaggaggaagttgttgca gtgcgatcacgaaagagaaatccaaagaattccttgatgtcaggttcaacaccatcgaca ttgggttctggtttgacatcagaatcggagccaagaatttcgaagaggaggaaaaacgtg gatgtggcctcattggattttgctaaaaggttcaccttcgaagcagttaataccaataga aaagttgacccagaagtgccaatgagctgtggccagaaggggcaaactacggggaatgac tacactgctcctactggggatgcagctgagcgctttgggcagcgggatgctgagaagttt aaattccttggagaagggcgcaaagacgcaaaaggcagacgtcctggaaacccgggcttt gatccgagaacacttttattgccacctcagttcttgaagaatttgacaggagggcagagg caatggtgggaattcaaatcacagcacatggataaggttctgtttttcaagatgggcaaa ttctacgaactatttgagatggatgcacatgttggagcaaaggatcttgatcttcagtac atgaagggtgaacagccccactgtggattcccagagaagaatttatcagtgaatttggag aagttagctgagaagggttatcgagttctggttgtcgagcaaactgaaacacctgaccag cttgaacttcggcgtaaggagatgggtataaaggacaaggttgtcagacgtgaaatatgt gcagtagtcacaaaaggaacactaatagaaggagagcacctactggcaaacccagatcct tcatacctcctgtccgtgactgaaagttaccaacgaagtccaaataagagccaagacaca tgtaccattggtgttagcatagttgatgtttctacaagcaaatttattgtaggacagttc caagatgatccagagcgccatggattgtgttcaattttgtctgaaatgaggcctgtggaa attataaagcctagtaaaatgctgagtccagaaactgagaaggcattaaacaacaacaca aggaagcctttaataaatgagctggttccgtccacagaattctgggacgcagaaaagact attgatgagataaaacagtactacagctcagccaataaacagaaaaaagccgatgatata caagactgtgtggactgtctgcctaacttattacgcgagttaattggagcaggtgataaa acatatgcactttcagctctaggaggttccttattttatttaaggcaaacccttctggat gagaaaatacttccatgtgctgagtttgagccacttgcatgctcggggttcatcaacaat atccgaaaacatatgatacttgatacagcagcattggagaatctagaacttttggaaaat acaagaactggtggcctctcagggaccctgtatgcacaactgaatcattgtgttactgga tttggaaagagattgctcaaacggtggatcgcaaagccattgtatgatcgcagagaaata cttcggcgtcaaagtgctgttgctactttcaagggagttggccaagattgtgctgcacag ttccgtaaggatttgtctaggctccctgacatggaacgcctgcttgcacgtcttttctca agctgtgatgaaaacaagagaagttcatcagttgttctttatgaagatgcatcaaagaaa ctgcttcaacagtttacttctgcgctttgtggatgccagcagatgttccatgcatgttct tctattagtacattgatatgctcagagggatctcaacttattgatttgctgtcaccaggc aaaggcctatcaaatatttcatctattttagaccgattcagagatgcatttgattggtca gaagcagaccgcaatggtcggatcattccttctgaaggttgtgatcctgaatatgatgcc acttgcaatgcaatagaagagatcaaatccagtctaaaagagtacttgaaggagcaacga aagcttttgagacctgcatcggttaattatgttaatgttggaaaagatatgtacctaatt gaagtgcctgagagtttgggaggttcagttcccagaaactatgagttgcagtctacaaaa aagggtttctatcggtactggacgccagaactgaaagagctaatattagaactttcaaag gctgagtcagagaaagaatcaaaattgaaagccattcttcagaatctgattcagctattt gttgagcatcacactgagtggaggcagctggtttctgttgttgctgagcttgatgtattg acaagtcttgctattgcaagtggttattttgagggaccaagttgctgtccaactataaaa gaatcaaatggcacagacgatactcctactttccatgctagaaatcttggacatcccatt ctacgaagtgattccttaggcaagggttcatttgtaccgaatgacgttaagataggtggt ccagggaatgccagttttattgttcttactggtccaaatatgggtggtaaatcaactctc ttgcgccaagtttgtcttaccattatactggctcagattggagcagatgttcctgcagaa aaacttgagctttctcttgttgaccgtatcttcgttcgaatgggagcaagggatcatatt atggctggccaaagtacattcttggtggagctcgaggagactgcctcagtgctttcatca gctaccaagaattctcttgtggtgttagatgagcttggacggggtacatcaacttctgat ggacaagctatcgcggcttcagttctggaatatctagttcatcaggtgcagtgtctaggc ttgttttctacacactatcataggttagcaatggaacacaacgataccaaggtatcgctg tgccatatggcgtgcgaggtggtcgagggagtaggaggtctggaagaagtgactttcctt tatagattaacacctggtgcttgccctaaaagttatggtgtaaatgttgctcgattggca ggaattcctactaaattgcttcaaagagcgaatgaaaagtcgagtgaatttgaggccaat tacgggaagcgacacaagatgaccaacgataagcacgtcagtgcacagagcgatgataag ttttctgccataagggatctgtttcgaattgtgaagacatggcctcgtcctgaagatcag gaagcgagtataagcatgctccgtaaattgcagaagcgtgccaaggtatag

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