Zingiber officinale (ginger): 121971371
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Entry
121971371 CDS
T08725
Name
(RefSeq) Fanconi anemia group J protein homolog isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121971371
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zof03400
]
121971371
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121971371
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
121971371
FA (Fanconi anemia) pathway
Downstream FA components
121971371
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
Motif
Other DBs
NCBI-GeneID:
121971371
NCBI-ProteinID:
XP_042378536
LinkDB
All DBs
Position
4A:complement(135945625..135958423)
Genome browser
AA seq
1253 aa
AA seq
DB search
MAASPTPFQNPNAGKARPGAYQIGGVPVEFPYKPYGSQLAFMGRVIHTLDRARRQGRCHA
LLESPTGTGKSLSLLCSSLAWQRHQTSRFLSGHAAPSQGLPPPPTSDPLVNGGGFIPETQ
PSNDAEQSSTPASARAQRRQTSPKIYYATRTHSQITQVIREYRKTSYRVPMAVLASRKHY
CTNKFVCTKANLDEECKLLLKGEALGCSEFKNANKVKNHPSLQKGGCYEVHDIEDLVKVG
KSVKGCSYFAAQTLAEEARLVFCPYSYIVNPIVRRAMDIDLKGAIVILDEAHNIEDIARD
SGSLDVEEDVLFALQTELGQLCMADNDAAVYQPLYDIIQGIISWMGERKMGLQQCEFEHY
SSFWTADKAISELQHAGITQQCFPILQECATKAIKAVSDAESVESHLSGMSAIALEGLFS
SLTYLFSGDGTNATDYQLGLQRYVKRDNSNAVSDWICKLSLWCLNPALVFREIANLSLSV
ILTSGTLSPMGSFASELGVQFEACMEAPHVIDPESQLWAAVVSTGPGNCQLNASYRTADG
FAFQDGLGVTLEEICKIAPGGILVFFPSYKLLEKLRRRWTQTGQWSRLNAEKPLFVEPRG
ATDEFESLLRGYYDAIRGSTKVVHEKSRLGSRRTIKQPCSKVCSQNTPRGAAFLAVCRGK
VSEGIDFSDENARVVVVVGIPFPNKNDIQVMLKKKYNDTHRSTKHLLSGSEWYCHQAFRA
LNQAAGRCIRHRFDYGAIIFLDERFKEERNLTYISKWLKNSIKYFHSFNESLVGLQNFFE
SAQKRFGSASSHSRSEDVSLIEKEPDFSEQNSNLNQGIQLQKTEKDNVNYQNARKMSNQN
GAVSAKLTKSSKLDKKGPFLKDQSQNGVEGASETIIKCLNPHTDFADLKSSTTIQFQCLE
AISAKSCKADLHQPLATTNSIVRDHNATPKSLEVEMIQQTVGNFSPKTISIGSISDTACT
PEHSPEDIKETDSLNMSVNSYNHKRKRINLQMSVCNQIDCLSSDTDSFYPVDSISSISRE
TDLIPESPCLDNSSVNRQRKLIGNVVDTLTKMLELSCLYCRSPLGLQENDLLVNCSLTSS
SKVYLAYVLKHGPPKDSSFNCPPTSPERDVPVVVCDSSLVDHRVFENGCKEAVSHGIWSE
KDSCVFRALICPFCTVPRCLGVQIIAADASNSHLLNKVLLFADHLDINDQQKPNQKDVTP
ICSTVPGKESASLEIEKYAYTPTLPKPDLNTRKLKQLSLPKRVECSLEHQDVL
NT seq
3762 nt
NT seq
+upstream
nt +downstream
nt
atggccgcctcgccgacaccctttcaaaaccctaacgccggcaaggcccgccccggtgcc
taccagatcggaggcgtccccgtcgagttcccttacaaaccctacgggtcccagctcgcc
ttcatgggccgcgtcatccacaccctcgaccgcgcccgccgccagggtcgctgccacgcc
ctcctcgagtcccccaccggcaccggcaagtccctctccctcctctgctcctccctcgcc
tggcagcgccaccagaccagccgcttcctctccgggcacgccgctccgtcccagggcctt
ccgccgccgcccacctctgatccccttgtaaatggcggcggattcatccccgagacacag
ccttctaatgatgctgagcaatcatcaacgccagcaagtgctagagctcagagaagacag
acatcgcctaaaatatactatgccacgaggactcactcgcagataactcaggtgattcgt
gaatacaggaagacatcttatcgagtgccaatggcagtgctggcttcacgcaaacactat
tgcaccaacaagtttgtgtgcactaaggcaaatttggatgaagaatgtaaattgcttctg
aagggcgaagcactgggatgctctgaatttaaaaatgcaaataaagtcaaaaatcatcct
tcacttcagaaaggtggctgttacgaggttcatgacattgaagatcttgtaaaagttggg
aaaagtgtaaaaggttgttcatattttgctgcacaaacgttagcagaggaagctcgacta
gttttctgtccttacagttacatagttaatcctatagttcgcagagccatggatatagac
ttaaaaggagccattgtgattctagatgaggcacacaacatagaggacattgcacgtgat
tccggaagtctagatgtggaagaagatgtactttttgcattgcaaacggaactaggacaa
ttatgcatggctgacaatgacgctgcagtataccaacccctgtatgacataattcaggga
ataataagttggatgggtgagaggaagatgggcttgcaacaatgtgaatttgagcactac
tcttcattttggactgctgataaggccataagtgagctccaacatgctggaattacacaa
caatgtttcccaatcttgcaagaatgtgcaacgaaggcaattaaagctgtctcagatgca
gagtctgttgaaagtcatttaagcggcatgtcagcaattgcattggagggcctattttcc
tcgcttacttatctcttctcaggagatggtactaatgcaactgattatcagctaggattg
cagcgatatgttaaaagagataacagtaatgctgtgagtgactggatctgcaaattgagc
ttgtggtgcctaaatcctgctcttgtctttagagagattgcaaatctttctctttcagtt
atccttacatcaggaactctctccccaatgggttcatttgcatctgaacttggagtgcag
tttgaagcttgcatggaagcaccacatgtcattgacccagaatcgcagctttgggctgca
gttgtttccactggtcctggaaattgtcaattgaatgccagctatagaactgctgatgga
tttgccttccaggatggactaggagttactttggaagaaatatgcaagattgcaccagga
ggaattcttgttttctttcctagctacaaattgttggaaaagcttcgtcgtcgctggact
cagacaggtcaatggtctcgtttgaatgctgaaaagccactgtttgttgagccaagagga
gccacggatgaatttgaatctcttcttagaggttattatgatgcaattcgtgggagtaca
aaagtagttcatgagaaaagtagacttggttcaaggcgaaccattaaacaaccttgcagc
aaggtgtgctcacaaaatactccaagaggagctgctttccttgcagtttgccgaggcaag
gtatcagaaggaattgacttctcagacgaaaatgctagagtagttgtagtggttggtatc
ccttttccaaacaagaatgacattcaggttatgttgaagaagaagtataacgatacacat
agatcaacaaagcatctccttagtgggagtgaatggtattgccaccaagcattccgtgct
ttaaatcaagctgcaggtcgctgcataaggcacagatttgattacggagccatcattttt
cttgacgagcgattcaaggaggagcgaaacctaacttacatttcaaagtggttgaagaac
tcaatcaagtatttccatagcttcaatgaatccctagtgggattacagaacttttttgaa
tctgctcagaagcggtttggttctgcgagtagtcattcaagatccgaggatgtttctctg
atagaaaaggaacctgattttagcgagcagaattcaaatttgaaccaagggattcaattg
cagaaaacagaaaaagacaatgtcaactatcagaatgcaagaaaaatgagcaatcaaaat
ggagcagtttctgcaaaactgacgaaatcatccaaacttgacaagaagggtcctttcctg
aaggatcaaagtcaaaatggagttgaaggtgctagtgagacaattatcaaatgcttgaac
cctcatactgattttgcggatttaaaatccagtaccacaattcagttccaatgtttggag
gccatttctgctaaatcatgcaaagccgatttgcaccagcctttagccactacaaattca
attgtaagagaccacaatgctactcccaaaagtttggaggttgaaatgattcagcaaact
gtaggaaatttttctcccaagacgatctctatcggaagcatatctgacactgcctgcaca
ccagagcattctcctgaagatattaaagaaacagattccttgaacatgagtgtaaactca
tacaatcacaaaaggaaaagaataaatttgcaaatgtctgtttgcaatcagatagactgt
cttagttctgatactgactctttctacccagttgattctatcagcagcatatcaagagaa
actgatctgatacctgaatcaccatgccttgataacagttcagttaaccgacaacgaaag
ctcattgggaatgtggttgatacattgacaaagatgctagaattaagttgtttatactgc
agaagcccactggggttgcaagaaaatgatctcttagtgaactgttcattgacttcatcc
tccaaagtctatttggcatacgttctgaagcatggacctccaaaggacagtagtttcaat
tgtcctcctacatcaccagagagagatgtgcctgttgtagtctgcgacagttcattggtc
gaccatcgtgtttttgaaaatggctgcaaagaagcagtttcacatggtatctggtctgaa
aaagatagttgtgtattcagggctcttatttgccccttctgcaccgtcccaaggtgctta
ggggtgcagatcattgcagcagatgcatccaatagtcacttgttgaacaaggttctactt
tttgcagatcatttggatataaatgaccaacaaaaaccaaatcaaaaggatgtgacgccc
atttgctccactgttcctggtaaagaatcagcatcacttgagatagagaaatatgcatat
actcctactctgcccaagcctgacctcaatacgagaaaactaaagcagctcagtctcccc
aaaagagtcgagtgttctttagagcatcaggatgtactctaa
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