Zingiber officinale (ginger): 121971518
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Entry
121971518 CDS
T08725
Name
(RefSeq) DNA mismatch repair protein MSH7-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
121971518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zof03400
]
121971518
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
121971518
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
AAA_29
Motif
Other DBs
NCBI-GeneID:
121971518
NCBI-ProteinID:
XP_042378765
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Position
4A:141471195..141488381
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AA seq
1099 aa
AA seq
DB search
MQHRQTSLFSFLQKLTPGNEGSCEPYSSPDAIRHARQPKKAPHPTPLESKNNSEETSDEI
GGTDASSQKMRRQVLSAGIPVAANDGDRRANHFSSIMSKFVKEDKSGCASNGKSNQDCCG
SFICHPNDSTEKSVKDRTPDDKCSAKHVSAIKKSSDGLGPLYSECDLDVLGPETPAVRPR
VPLFKRIQQDPSDSDKQDSSLFGPNKRFKPIGKTVTEKKILENSCESTSSKFEWLVPFKI
RDANGRRPSDPFYDKRTLYIPPDALKRMSASQRQYWSVKCQYMDVVIFFKVGKFYELYEL
DAEIGQRELDWKMTISGVGKCRQVGVSEAGIDDAVHKLTSRGYNVGRMEQLETSEQAKAR
GASSVIQRKLVNVSTPCTPSDGNMEAEAVHLLALKEGDCGSKDGSIFYGFAFLDNASLKC
WVGSISNDNSCAALGALLVQISPKEIIHERSGLSEATRVALKKYASAGSMKIQLTATTPG
VDFLDSSEVMKLASSKGYFKGSSKQWFSAIDGSVNCDLAICALGGLITHLSRLMLDDTLR
NGELFSYHVYKNCLRMDGQTLLNLEIFSNNVDGGLSGTLYKHLDHCLTASGKRLLRRWIC
HPLRDFTGINQRLDVVEAFIKNSEIMSLIASYLTRIPDLERLLGRVRSTVGSSSMLLLPF
VGDKILKQRIKTFGFLVKGLRIGLELLNMIRKEDHGMLPISLFVNIPNLSSLDDLLNQFE
VALEDDFPHYQDHIVKDSDAETLAVLVELFSGKAIEWSQVINALNCIDVLQSFARASISS
FMPMSRPILLVNAYSPNLAKDKDGPMLHMKGLWHPYAVSGNGNDLVPNEIHLGNDSKICH
PCALLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEECMLSPVDTIFTRLGATDRIMSG
ESTFYVECSETASVLRNATKDSLVLLDELGRGTSTFDGYAIAYAVFRHLLEKVCCRLLFA
THYHPLTKEFGSHPHVSLQHMACSFHVGDGISSPRNDLVFLYKLAPGACSESYGLQVALM
AGLPKQVVEAAASAGQNIKQLISRNFKSSEARSEFSTLHEEWLKSLWDISKPSVSLGDED
ISDTLLCLWHELRSFYKLR
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaccgccaaacctcactcttctctttcctccaaaaactcactccggggaatgaa
ggatcctgcgaaccctattcttctccggacgcgatccgccacgcacgtcagccaaagaaa
gccccgcacccaacaccattagagtcgaagaacaactccgaggaaacctccgatgagatc
ggaggaactgacgcttcgtctcaaaagatgcggcgtcaagtcttatcggcggggattccg
gtggctgccaatgatggcgatcgaagagctaatcatttttcgagcatcatgagcaaattt
gtgaaggaagacaaatccggatgcgccagtaatgggaaatcgaaccaagattgctgcggt
tcctttatttgtcaccccaatgattccactgagaaaagtgtgaaagatagaactcctgat
gataaatgctcagccaaacatgtttcagcgattaagaagagttctgatggattgggacct
ctgtattctgaatgtgatttagatgttctagggccagaaactcctgctgtgcgccctcgt
gttccgcttttcaagagaattcaacaggatccttctgattctgacaagcaagattcttct
ctgtttggtcctaacaaaaggtttaagccaataggcaagactgttactgaaaagaaaatc
ctggagaattcatgtgaaagtacaagtagcaaatttgagtggcttgttccttttaaaatt
agagatgccaatggaaggagaccaagtgatccattttatgacaagagaaccctgtatatt
ccacctgacgcattgaagagaatgtcagcatcacaaaggcaatattggagtgtgaaatgt
caatatatggatgttgtcattttctttaaagtgggcaagttttatgagttatatgagttg
gatgctgagattggacaaagagaacttgactggaaaatgaccattagtggtgtcggtaaa
tgcagacaggttggtgtttcagaggctggaatagatgatgctgttcataaactaacttct
aggggatacaatgttggacggatggaacaacttgagacctcagaacaagcaaaagctaga
ggagcatcttctgtcatccaaagaaaacttgtaaatgtatcaactccttgcacaccaagt
gatggcaacatggaagcagaagcagttcaccttcttgctctgaaagagggagattgtggt
tctaaggatggttctattttttatggatttgctttccttgataatgcttcattaaaatgt
tgggtgggttccatttctaatgataactcttgtgctgcacttggggcattgctagtgcaa
atttcaccaaaagaaattatccatgaaagatctggactctcagaagcaactcgtgttgca
ctaaaaaaatatgcttcagcaggttcaatgaaaatacaattgactgccacaactcctggt
gtagattttctagattcaagtgaagttatgaagttggctagttctaaaggatacttcaaa
ggatcttctaagcaatggttttcagcaattgatggttctgtgaactgtgaccttgctata
tgtgctctcggtgggcttattactcacctatcaagactaatgctagatgatactttacgt
aatggagagctcttttcttaccatgtgtataaaaattgtttgaggatggatggccagact
ctacttaatcttgagattttcagcaataatgttgatggtggcttgtcaggcactttatat
aagcatcttgatcattgcttaactgcatctggtaaacggcttttgagaaggtggatctgt
catcctttgagggattttactggtatcaatcaacggcttgacgtagtggaggcattcata
aagaattcagagataatgtccttgatagctagttatctgactagaattccagatcttgag
agattacttggacgagtcaggtctactgttggttcatcatccatgctacttttgccattt
gttggagataagatactgaagcagcggattaaaacatttggatttcttgttaaggggctt
cgaattggattagaattgttaaatatgataaggaaagaagatcatggaatgctgccaata
tcattgtttgtcaatattccaaacctcagcagccttgatgatctgcttaaccagtttgaa
gtagctttggaggatgactttccacattatcaggatcacattgtcaaagattctgatgct
gaaactttagctgtcctagttgagctattttctgggaaggctattgaatggtctcaggtc
atcaatgcacttaattgtattgatgtgcttcagtcctttgctagagcatcaatttcgtca
tttatgcctatgagtaggcctattcttttagtgaatgcatattcaccaaatctagccaaa
gataaggatggtccgatgcttcacatgaaaggtttgtggcatccttatgctgtttcaggt
aatgggaatgatctggttcctaatgagatacaccttggaaatgactcaaaaatttgtcat
ccttgtgcattgttgctgactggaccaaatatgggtggaaagtcaacattgttgcgagca
acatgcctagcagttatattagcccagctaggttgctttgtaccttgtgaagaatgtatg
ttatcccccgttgataccatctttacacgtctcggtgcaactgatcgaatcatgtctggt
gaaagcacgttctatgttgagtgctcagaaacagcatcagttcttcggaatgctaccaaa
gattctcttgttttgcttgatgagcttggtcgaggaacaagcacatttgatggttatgca
attgcctatgctgtgtttcgccatctcttggaaaaagtttgctgcaggttgctgtttgct
acccactaccatccacttactaaagaatttggatcacaccctcatgtaagcctacagcac
atggcctgttctttccacgtgggagatggaatctcttccccgaggaatgatctggtcttt
ctctacaaacttgctcccggtgcttgctcggagagctatggcctgcaagttgctttaatg
gcaggcctccctaagcaagttgttgaagctgctgcaagtgctggccaaaacataaaacag
ctcatcagtcgaaatttcaagtcaagtgaggccaggtctgagttctccaccctgcatgaa
gaatggttgaaatcactctgggatatttcaaagcctagtgtgagtttgggcgatgaagac
atatctgatactttgctttgtttgtggcacgaattgaggagcttttataaactgaggtag
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