Zingiber officinale (ginger): 121975834
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Entry
121975834 CDS
T08725
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1-like
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121975834
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
121975834
Enzymes [BR:
zof01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121975834
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
121975834
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
121975834
NCBI-ProteinID:
XP_042383655
LinkDB
All DBs
Position
4B:complement(103784565..103803715)
Genome browser
AA seq
1674 aa
AA seq
DB search
MTDARNEEAASAVIDSVHFSFYTPEEVRRLSVKKITNEYLLDAKNSPIPDGLYDPAMGPL
NDTDPCKSCGQLSVRCPGHCGHIDLAKPIYNPLLFKILQNLLQVTCFFCHKFRKNEDKVK
HCVEQLRLIVKGDIAGARNLEAHSSSEAFFSQEESAESVTSVASDIEVASSEHKTWTSLQ
HSESRAVLYNFMSDKRKNCDNCGRKNPSITSPVFGWFNKGLRASDIKANILLGYNVGPTS
SESKNSTVTHSRGESGSEMADELSSLEQKTKEKIKLDDLPPEVIKLMQSSGPKHLLPSEV
ELILKDLWKNEADLCLLMLDLQCRSQSPMERGYEIFFLKAILVPPNKFRPAAASTARGVM
EHPQNTLLNKVQQANIALKSCTGDSNNTDILRRWMDLQRSVNVLYDSTKGLGKSEKESNG
IRQLLEKKSGILRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN
VKKLRLAVMNGADIHPGATHYKDRDRMYKLQASKDMRNVISRKLPTSRAVTAQHGMGPES
DFEGKVVYRHLQDGDIVLVNRQPTLHKPSMMAHVVRVLKGEKTIRMHYANCSTYNADFDG
DEMNVHLPQDEISRSEALNIANANKQYIVPTSGSPIRGLIQDHIVSAVLLTKLDTFLTRE
EYHQLIYVSCMPPTSYAQNRYGEKASLSWSENEIQPLPPAIWKPIPLWTGKQVITAILNY
VTRGCLPFTIEKKGRIQKEYIGNDSAQLVLHIYNNELIHGMIDKAQFGTYGLVHAVHELY
GPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDLLLKRSSDMERDRILEKSEMLSEEVHRRF
TRMKDDDKDPMKLQGEIEKVLRGHGESATALLDRMMSNAMNSLTSEINQTLFPSGLSKSF
LTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDVSSRSGG
FISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLECLKVSYDYTVRD
ADGSVVQFIYGEDGVDVLKSSYISEFKMLSDNQKVVLQKFNDQMVDATLEKSNIFINKLP
SSLKEGAIDFISKNQKRSPHQIKKKTFMKLMKQKYLTSLADPGESVGVIAAQSVGEPSTQ
MTLNTFHLAGKGDMNVTLGIPRLQEILMTASKDIRTPLMNCPLHAWKTKDDAERLSAKLR
RVYVADVVEKMEVCTVPFSIYGNEIATIYKLKMTLYPSKLYPAFYELTLEDCMEVIRTTF
VDAMEEAITKHLDMIHRISDINVASGKEENDFEEGFEEDESRNVATTAEANNDGGNGRDD
DDDDDSDDDDGTGAKKSKQARDEVEYEDGIENEKFATTTGEHDDEIRSGFESGVDQIEED
EDYVMGGENPPDSDTDTEAPETPTKGHSTPMPVDSKKSKFTNKGEESLSKAESTTVSKDK
KKKSKGKSEKLEVKKKLNKPKRSSKKIKRAISCKFEGLNFEVQFVFRKEPRILLAEIAQK
TSKCVYVKQCKNIDKCTVKENKNNTDPFTLQIAGVDFATLWNLYEHLDVNQIYTNDVHAM
LNTYGVEAARATIIKEVTNVFGLYGINVNIRHLSLIADFMTFHGGYRPMNRLGMGGFNTS
PFGRMTFETATKFIVESALHGEVDTLESPSASVCLGQPVKYGTGCFDLMQNLPM
NT seq
5025 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgctcgaaacgaagaggcagcttcagcagttattgattctgttcattttagt
ttttacaccccagaagaggtacgtaggttaagtgtcaaaaagatcaccaatgaatatctc
cttgatgcgaagaatagtcctattccagatggattatatgatcctgcaatgggtccactt
aatgatactgacccttgcaagtcctgtgggcagctttctgttcgttgcccaggtcactgt
ggtcatattgaccttgcaaaaccaatttataacccattactattcaagatcctccagaac
ctacttcaagtcacctgcttcttttgtcataagttcagaaaaaatgaagacaaggtaaag
cactgcgttgaacaattgcgtcttattgtgaaaggtgacattgctggggctagaaatttg
gaagcccactcatcaagtgaggcatttttttcccaagaagaaagtgcagaatctgtaaca
tcagttgcatcagatattgaagtagcaagttcagagcataaaacctggacatcacttcaa
cattccgagtctcgtgctgttttatataactttatgagtgataagcgaaaaaattgtgat
aattgtggtagaaagaatccatccatcaccagtcctgtttttggttggttcaacaaggga
ctacgagcttctgatataaaagccaatattctattggggtacaatgtgggtccaacatcc
agtgagtcaaaaaattcaactgttactcattcaaggggagagagtggctctgaaatggct
gatgaactttcttcactggaacaaaaaacaaaagaaaaaatcaaattagatgatttgcct
cctgaagtcatcaagctgatgcaatcttctggaccaaagcatttgctgccttctgaggta
gaacttattttaaaagatctgtggaaaaatgaggctgatctctgcctactaatgttagac
cttcaatgtcgaagccagagtcccatggagaggggctatgagatttttttcctgaaggct
attcttgtaccaccaaacaagttccgtcctgctgccgccagtactgctcgtggggtaatg
gaacatcctcaaaatactttgctgaacaaagtccaacaagctaacattgctttaaagagt
tgcactggtgattctaataatactgatattttgcggaggtggatggatcttcaaagaagt
gtgaacgtgttgtatgatagtaccaagggtttagggaaaagcgaaaaagaatctaatggt
atacgccaattgttggaaaaaaagtcaggtatcctacgacagaaaatgatggggaagaga
gtgaattttgcatgtcgttctgtcatatctcctgatccatacttagctgtcaatgaaatt
ggcattcctccttacttcgcattgagattgacatatcccgagcgagtgacaccttggaat
gttaaaaagctgcggcttgctgtaatgaatggtgccgatattcatcctggagctacacac
tacaaggacagggatagaatgtacaagctgcaagcaagcaaagatatgcgcaatgtgatc
tcaaggaaattgccaacatcaagagctgtcactgcccaacatggaatgggtccagaatca
gattttgaaggcaaggttgtctatcgccatttacaagatggagacattgtgcttgttaac
cgacagcctacccttcataaaccgagtatgatggctcatgtcgttcgtgtgttgaaaggg
gagaagacaattcgtatgcactatgcaaattgcagcacctacaatgcggattttgatggt
gatgaaatgaatgtacacctcccacaagatgaaatttcacgttctgaagctcttaacatt
gctaatgcaaacaaacaatatattgttcccacaagtggatcccctattagaggacttatt
caggatcatattgtgagtgctgtcctgttgacaaagttagacacttttttaacccgcgaa
gagtatcatcaacttatatatgtttcttgtatgcctcctacatcatatgctcaaaataga
tatggtgaaaaggcttctctctcatggtctgagaatgagattcagcctcttcctcctgct
atatggaaaccaataccattgtggacaggaaaacaggttattactgcaatccttaactat
gtcacacgaggttgccttccttttactattgaaaagaaaggaagaatacaaaaagagtat
attgggaatgatagtgctcaacttgttttgcatatttacaataatgagctaatacacgga
atgatcgataaggctcaatttggaacatatggtttagttcatgcagtccatgaactttat
ggtccagatgttgcaggaactctgctttctgtatttagccgattatttacttcctttctt
cagatgcatgggttcacttgtggagtagacgaccttttacttaaaaggagttcagacatg
gaaagggataggatattagaaaaaagcgaaatgttaagtgaagaagtccataggcgcttt
acgagaatgaaagatgatgataaagatcctatgaagttgcaaggtgagattgaaaaagtt
ctacgtggtcatggagaatcagcaactgctcttttggataggatgatgtcaaatgccatg
aatagtctgacttccgagataaatcagaccctctttcctagtggactgtcaaagtcattt
ttaacgaactgtctctctcttatgacagccactggagcaaaaggtggtctggtcaatatg
acacaaatatcttctttgttgggccaacaagaattggaagggaaacgggtgccacgtatg
gtatctggtaaaactttaccttgctttcctccttgggatgtttcaagccgatctggaggc
ttcattagcgatcgttttttgactggtctacgaccccaagaatactatttccactgcatg
gctgggcgtgacggcttggtggatacagccatcaaaacatcgcgtagtgggtacttgcag
cggtgccttgtcaagaatcttgagtgtctgaaagtctcatatgattatacagtacgagat
gctgatggatctgttgtccaattcatttacggggaagatggggttgatgttcttaagtca
agttatatttctgagtttaaaatgctttctgacaatcaaaaagtcgttttgcaaaagttt
aatgaccaaatggtggatgccactttagaaaaatcaaatatttttataaacaaattgcca
agttctctgaaagagggtgcaattgattttatttctaagaatcaaaagaggtctcctcat
caaattaagaaaaagacctttatgaagttaatgaagcaaaagtacctcacaagtcttgcc
gatccgggtgagtctgttggtgtcattgccgcacagtctgttggagaaccatcaacacaa
atgacgctcaatacatttcatttggctggcaagggagacatgaatgttacacttggaata
ccccgtttacaagaaatcttgatgactgcttcaaaggatatccgaactcctctcatgaac
tgtcccctacatgcttggaagacgaaagatgacgctgaacgtctttctgccaagttaagg
agagtctatgtggctgatgttgtggagaagatggaagtctgcactgttccattttccatt
tatgggaatgagatcgcaactatttataagctgaaaatgactctttatccaagcaaactc
tatccggccttttatgagctaacattagaagattgcatggaggttattaggacaacattt
gttgatgccatggaagaagccattacaaaacacttggatatgatacacaggatcagcgac
atcaatgttgcttccggcaaggaagaaaatgatttcgaggaagggtttgaggaggatgaa
tctagaaacgtagcaacgaccgcagaggcaaacaatgatggtggcaatggccgtgatgac
gatgacgacgatgatagtgatgatgatgatggaactggtgctaaaaagtcaaaacaagca
cgtgatgaagtggagtatgaggatggtatcgagaatgagaaatttgccacaacaacaggt
gagcatgatgacgagatccgatcagggtttgagagtggagttgatcagattgaagaagat
gaagattatgttatgggaggtgaaaaccctcctgattcggacacagacactgaagctcct
gaaactccgactaaaggacattctacacccatgccagttgatagcaagaaatcaaaattc
acaaacaaaggagaggaaagcctatctaaagccgagtctactactgtgtcaaaagataaa
aaaaagaaatcaaaagggaagagtgaaaaattagaggtgaaaaagaaacttaataagccc
aaaagaagcagcaagaaaatcaaaagagcaatttcttgcaaatttgagggattgaacttt
gaggttcagtttgtcttcagaaaggaaccccgtattctgttggctgagattgcgcaaaag
acatcaaagtgtgtgtacgtcaagcaatgcaagaacatcgacaagtgtacagtgaaagaa
aataaaaacaataccgatccattcacactgcagatcgcgggagtggactttgctacactt
tggaatttgtatgagcatctggatgtcaatcaaatttatacgaacgatgtacatgcaatg
cttaacacatatggtgtagaagcagccagagcaaccatcatcaaggaggtcactaatgtg
tttgggttatatggtataaatgtaaacatccggcatctgagcctaattgctgatttcatg
acctttcacggtggataccgacctatgaacagacttggtatgggtgggttcaacacttcg
ccctttggtaggatgacatttgagaccgccaccaagttcatcgtcgagtcagccttgcac
ggggaagtggacacattagaatctccatcagccagtgtatgccttggccagcccgtcaaa
tatggaactggttgtttcgacttgatgcagaatttgcctatgtga
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integrated database retrieval system
