Zingiber officinale (ginger): 121981527
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Entry
121981527 CDS
T08725
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase-like
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
zof03016
]
121981527
Enzymes [BR:
zof01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
121981527
Transfer RNA biogenesis [BR:
zof03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
121981527
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM
TraT
Motif
Other DBs
NCBI-GeneID:
121981527
NCBI-ProteinID:
XP_042390029
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Position
5A:complement(122245130..122258593)
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AA seq
609 aa
AA seq
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MEDIEDLVGAGAPPGLRLPVTAIGIKAKRKPKSRLLSDPVSPNPQIPGTQTIYLKTFGCS
HNQSDSEYMAGQLSAFGYAVTEDPEQADLWLINTCTVKSPSQSAMATLIGKCKTAKKPLV
VAGCVPQGSRDLKDLEGISIIGVQQIDRVVEVVEETLKGHEVRFLNRKTLPSLDLPKVRK
NRLIEILPINVGCLGACTYCKTKHARGHLGSYTVESLVERVKNVISEGVKEIWLSSEDTG
AYGRDIGQNLPVLLNAIITELPPDRSTMLRIGMTNPPYILEHLKEIAEVLNHPCVYSFLH
VPVQSGSDSVLTAMNREYTVSEFRTVVDTLKELVPGMHIATDIICGFPGETDEDFEQTIN
LIKDYQFAQVHISQFYPRPGTPAARMKKVPSTVVKNHSRELTSVFESFSPYQGMTGQTLR
IWITEIATDGVHLVGHTKEYIQVLVIAPESMLGTSVDAKITSVGRWSVFGEITETPVFVE
DAAHLGRPLAGSSISCVNCECSEDPMPCQCLGENSCGQQISSTEHEGHTKTAMNGSHSEI
TFIASTKSMPLRKRRPQGESNEINLVNNQEAAHVCSKLVAIDWILLGGIALSFITSSVVL
ILLSSNLFS
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggaggacatagaggacctcgtcggcgccggcgctccgcccggcctccgtcttcccgtc
actgccatcggtatcaaagccaagagaaagcctaaatctcgcctcctctctgaccccgta
tccccaaaccctcaaatcccaggcacacagacgatatacttgaagacgttcggctgttcg
cataatcaaagtgatagtgagtatatggctggtcaactgtcagcatttggttatgctgtg
acggaggatcctgagcaggcggacttatggctgataaatacatgcactgttaagtctcct
agtcagtctgcaatggcaacacttatagggaagtgtaaaactgcaaaaaagcctttagta
gtggcgggatgtgttcctcagggtagtcgagatttgaaggacctcgaaggcattagcata
attggagtacaacaaatagatcgtgttgttgaagtcgtagaggagactttgaaaggccat
gaagtacggtttttaaacaggaaaacattgccatcactagatcttcctaaggtaaggaaa
aacaggttaattgaaattcttcctataaatgttggttgtttaggtgcttgtacttattgc
aagacaaagcatgctcgtggccatctagggagctatacagttgaaagccttgtagaacgt
gtaaaaaatgttatttctgaaggagtcaaggagatctggttgagcagtgaagacactggt
gcatatggtcgggatattggacaaaaccttccagttcttttaaatgctattatcactgag
cttcctcctgataggagtaccatgcttcgcataggcatgaccaatccaccatatatactg
gaacatttgaaagaaattgctgaagtactgaatcatccatgtgtatattcattcttacat
gttcctgttcaatcagggagcgactctgtcttaacagcaatgaatcgtgagtacactgta
agtgagttcagaacagtggttgacactctcaaagagcttgttcctgggatgcatattgct
actgatataatatgtggttttcctggtgaaacagatgaagactttgaacaaactatcaat
cttataaaagattaccagtttgcacaagttcacatatcccaattttatccaaggccaggt
acccctgctgcaaggatgaagaaggtccctagcactgtagttaagaatcacagtcgtgaa
cttacttcggtttttgagtcattctctccataccagggtatgacaggccaaactctgagg
atatggattactgaaattgctactgatggagttcatctggttggtcatacgaaggaatat
atccaagtccttgtgattgctcctgaaagtatgttggggacctcagtggatgcaaagatc
acctctgtgggaagatggtctgtttttggtgaaattactgagactccagtttttgttgag
gatgccgcacacctaggaagacctctagcaggatcttcaatttcatgtgtaaactgtgaa
tgctcagaggatcctatgccctgccaatgcctcggtgagaattcatgtggccagcaaatt
agtagcactgaacatgaaggccataccaagactgctatgaatggaagccacagtgagata
acattcattgcctcaactaagtctatgccgctgcgtaagagaagaccacaaggagagagt
aacgaaattaatctggtaaataaccaagaagcagcgcacgtgtgtagtaaattagtcgca
atagattggattttgctgggtggaattgctctgagctttattaccagttcagttgtgctg
attttgctttcctcaaacttgttttcttga
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