Zingiber officinale (ginger): 121985404
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Entry
121985404 CDS
T08725
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase-like
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
zof03016
]
121985404
Enzymes [BR:
zof01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
121985404
Transfer RNA biogenesis [BR:
zof03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
121985404
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Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
TraT
Motif
Other DBs
NCBI-GeneID:
121985404
NCBI-ProteinID:
XP_042394775
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Position
5B:complement(114096827..114112572)
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AA seq
609 aa
AA seq
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MEDIEDLVGAGAPPGLRLPVTAIGIKAKRKPKSRLLSDPVSPNPQIPGTQTIYLKTFGCS
HNQSDSEYMAGQLSAFGYAVTEDPEQADLWLINTCTVKSPSQSAMATLIGKCKTAKKPLV
VAGCVPQGSRDLKDLEGISIIGVQQIDRVVEVVEETLKGHEVRFLNRKTLPSLDLPKVRK
NRLIEILPINVGCLGACTYCKTKHARGHLGSYTVESLVERVKSVISEGVKEIWLSSEDTG
AYGRDIGQNLPVLLNAIITELPPDRSTMLRIGMTNPPYILEHLKEIAEVLNHPCVYSFLH
VPVQSGSDSVLTAMNREYTVSEFRTVVDTLKELVPGMHIATDIICGFPGETDEDFEQTIN
LIKDYQFAQVHISQFYPRPGTPAARMKKVPSTVVKNRSRELTSVFESFSPYQGMTGQTLR
IWITEIATDGVHLVGHTKEYIQVLVIAPDSMLGTSVDAKITSVGRWSVFGEITETPVFVE
DAAHLGRPLAGSSNSCVNCECSEDPMPCQCLGENSCGQQISSTEHEGHTNTAMNGSHGEI
TFIASTKSMPPRKRRPQGESNEINLVNNQEAAQMCSKLAAIDWILLGGIALSFITSSVVL
ILLSSNLFS
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggaggacatagaggacctcgtcggcgccggcgctcctcccggcctccgtcttcccgtc
actgccatcggtatcaaagccaagagaaagcctaaatctcgcctcctctctgaccccgta
tccccaaaccctcaaatcccaggcacacagacgatatacttgaagacgttcggctgttcg
cataatcaaagtgatagtgagtatatggctggtcaactttcagcatttggttatgctgtg
acggaggatcctgaacaggcggacttatggctgataaatacatgcactgttaagtctcct
agtcagtctgcaatggcaacgcttatagggaagtgtaaaactgcaaaaaagcctttagta
gtggcgggatgtgttcctcagggtagtcgagatttgaaggacctcgaaggcattagcata
attggagtacaacaaatagatcgtgttgttgaagtcgtagaggagactttgaaaggccat
gaagtacggtttttaaacaggaaaacattgccatcactagatcttcctaaggtaaggaaa
aacaggttaattgaaattcttcctataaatgttggttgtttaggtgcttgtacttattgc
aagacaaagcatgctcgtggccatctagggagctatacagttgaaagccttgtagaacgt
gtaaaaagtgttatttctgaaggagtcaaggagatctggttgagcagtgaagacactggt
gcatatggtcgggatattggacaaaaccttccagttcttttaaatgctattatcactgag
cttcctcctgataggagtaccatgcttcgcataggcatgaccaatccaccatatatactg
gaacatttgaaagaaattgctgaagtactgaatcatccatgtgtatattcattcttacat
gttcctgttcaatcagggagcgactctgtcttaacagcaatgaatcgtgaatacactgta
agtgagttcagaacagtggttgacactctcaaagagcttgttcctgggatgcatattgct
actgatataatatgtggttttcctggtgaaacagatgaagactttgaacaaactatcaat
cttataaaagattaccagtttgcacaagttcacatatcccaattttatccaaggccaggt
acccctgctgcaaggatgaagaaggtccctagcactgtagttaagaatcgcagtcgtgaa
cttacttcggtttttgagtcattctctccataccagggtatgacaggccaaactctgagg
atatggattactgaaattgctactgatggagttcatctggttggtcatacgaaggaatat
atccaagtccttgtgattgctcctgatagtatgttggggacctcagtggatgcaaagatc
acctctgtgggaagatggtctgtttttggtgaaattactgagactccagtttttgttgag
gatgctgcacacctaggaagacctttagcaggatcttcaaattcatgtgtaaactgtgaa
tgctcagaggatcctatgccctgccaatgcctcggtgagaattcatgtggccagcaaatt
agtagcactgaacatgagggccataccaatactgctatgaatggaagccacggtgagata
acattcattgcctcaactaagtctatgccgccgcgtaagagaagaccacaaggagagagt
aacgaaattaatctggtaaataaccaagaagcagcgcaaatgtgtagtaaattagccgca
atagattggattttactgggtggaattgctctgagctttattaccagttcagttgtgctg
attttgctttcctcaaacttgttttcttga
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