Zingiber officinale (ginger): 121989235
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Entry
121989235 CDS
T08725
Name
(RefSeq) DNA-directed RNA polymerase I subunit 2-like isoform X1
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121989235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
121989235
Enzymes [BR:
zof01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121989235
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
121989235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpa2_4
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-GeneID:
121989235
NCBI-ProteinID:
XP_042399081
LinkDB
All DBs
Position
6B:complement(118705119..118720668)
Genome browser
AA seq
1163 aa
AA seq
DB search
MGSKSKPDYEALRDLFRPHVESFDYFIDEGLEKIFFGIRPEEIVDRITGVKLRISVENPQ
LLPPTKDGRLNEPLYPHECRQARTTYKGCFKASLCCQYDDGVIVRDSINFGYLPIMLKSK
LCHLRGADPQKLVFHKEEATEMGGYFICSGMERLARLLIIQKRNYPLSMVRRSLNNRGPG
YSDKAVVIRCTREDQSSVTLKLYYLENGSARLGFWIRGREFLLPVGIILKAFIDTNDHEI
FVSLTCYYNERYQREKGAVGTQLIGERAQIILDEVRDLSLFTHHHCLKHIGEYFRSVMDG
FETENYITVAEAVLREYIFVNLGSNHDKFNLLIFMLQKLYALVDQTAAPDNIDTLQNQEV
LLPGHLIAICLKEKIQMWLRKARQQILDELAKKERTFDIKSVTQVKKILTKNSAHIGRAI
ESMIKVGRLNAQSGLDLPQREGMTIMAERLNFFRYLSHFRSVHRGAAFTKMRTTSVRKLL
PESWGFLCPVNTPDGEPCGLLNHMTCSCRISSSYDSEGKIKDPLKIRMSILSVLVAIGMT
PLLPKLERAGPPEVLHVLLDGCVVGSITSCQIEKAVAHIRSLKLSALSGIPEDLEVGYVP
LSYGGAYPGLYLFTNTSRFIRPVRNLAHGNDIELIGPFEQAFMEIRCSDGGDGGRREFFP
ATHEEIHPTGILSVVANLTPWSDHNQSPRNMYQCQMAKQTMGFSGQALQYRADLKTYHLQ
TPQSPIVRTTSYTKYCMDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGLSRGHIYQ
TESIDLAKKHETDRIQEIFARSNTDRNMMFSIDSDGLPYVGQMVHPREPLYSTHNTLTST
TKPTFLKGSEDAIIDYVSVDGTGSKNYLQKVNIRTRRTRYPIIGDKFSSRHGQKGVCSQL
WPDVDMPFSAVTGMRPDLIINPHAFPSRMTIGMLLESIAAKGGSLHGKFVDATPFPRSNC
NEEDEDKISKSSSVVDELGPMLTAYGFNYHGVEVMHSGVYGTELTCEIFIGPVYYQRLRH
MVSDKFQVRSTGTVDQITRQPIGGRKRGGGIRFGEMERDAVLAHGAAYLLHDRLHSCSDY
HIADVCSYCGSVLSATIIQPQKKSAREIHGLPPARTPKSYICQACKTSKGMETVAMPHVF
KYLAAEFTAMNIKMDLQLRSQAS
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgggatcgaagtcgaagcccgactacgaggcgttgcgagatctcttccgtccgcacgtt
gagtcctttgattactttatcgacgagggtctcgaaaagatattttttggaatacgcccc
gaagaaatcgtcgaccgcataactggagtcaagctcagaatttccgtagagaatccgcag
ttacttcctccaacaaaagacgggcggctaaacgaacccttgtatccccatgagtgtagg
caagccagaacaacttataaaggatgtttcaaagcgtcattgtgctgtcagtatgatgat
ggagtcattgttagagattctatcaactttggatatcttccaataatgctgaagtcaaaa
ctctgccacctgagaggtgctgaccctcaaaagcttgttttccacaaagaggaggcaaca
gaaatgggtgggtacttcatttgctctggaatggagcgacttgcacgacttttaattata
caaaagcgtaattatccgttgagcatggtgcgcagatcattgaataaccgtggaccaggc
tacagtgacaaagcagtggttataagatgtactcgagaagaccaatcttctgtcactctc
aagttatactaccttgaaaatggaagtgcaagacttggattctggataagaggaagagag
tttttgcttccagttggtattattttgaaggcttttattgacacaaatgatcacgaaatc
tttgtgagcttgacatgttattataatgagagataccaaagagaaaaaggtgctgttgga
actcaacttattggtgaaagggctcaaattattcttgatgaagttagagatttgtcgctt
tttactcaccaccactgcttgaagcatattggagagtacttcagatctgttatggatgga
tttgaaactgagaattatataactgtcgcagaagctgttcttagagaatatatttttgtt
aatcttgggagcaatcatgacaagttcaatttgctaatttttatgctgcagaaactttat
gcacttgtagatcaaactgctgcccctgataatattgatacactgcaaaaccaggaagtt
ctgttgcctggacacttgatagccatttgtcttaaggaaaaaattcaaatgtggttgagg
aaggcaagacaacagattcttgatgagctagcaaagaaggaaagaacttttgatataaaa
agtgtaacacaggtgaagaagattttaaccaagaattctgcacatattgggagggccatt
gagagtatgataaaagttggaagattgaacgcgcaatcaggtctagacttgcctcagaga
gaaggaatgaccattatggcagagaggctcaatttcttccgttatctatctcattttcgt
tctgtacatagaggtgctgcttttacaaaaatgcgtacgacaagtgtacgaaaattgctg
ccagagtcttggggcttcctttgccctgtcaatactcctgatggagagccttgtggcttg
ctgaaccatatgacttgttcctgccgcatttcatcttcctatgattcggaaggaaaaatt
aaggaccctctcaagataagaatgtcgatactctctgttttagttgcgattggaatgaca
ccattgcttccgaagcttgagcgtgctggcccacctgaggttcttcatgttcttttggat
ggatgtgttgtaggttccataacttcttgtcaaattgagaaagcagttgcacatatccgg
agcctgaaactttctgccttatcagggattcctgaagatttagaggtaggatatgtacct
ttaagttatggtggagcatatcctggattatacctatttactaacacttccagatttatt
cgaccggttagaaatcttgcccatggcaatgatattgaacttattggtccgtttgagcag
gcttttatggaaataagatgctctgatggtggagatggtggaagaagagaattctttcct
gcgacacatgaagaaatacacccaacaggaatacttagtgttgttgccaatcttactccc
tggtctgatcacaatcagagcccacgaaacatgtaccagtgccagatggccaaacaaaca
atggggttttctggccaagctttgcaatatcgtgcagatttgaagacatatcatctccag
actcctcaatctccaatcgtccggactacttcatatactaagtactgcatggatgagttc
ccaacaggcacaaatgcaattgttgcagttttagcttacactggttatgacatggaagat
gccatgatcttgaacaagtcatctgtggaccgtgggctaagtcgtgggcatatttaccag
acagagtcaattgacttagcaaagaagcatgagacagaccggatccaagaaatatttgct
aggagtaacactgatagaaacatgatgttttcaattgactcagatggcctaccatacgtt
ggacagatggtacatccacgtgagccattatatagcacacacaataccttaacaagcaca
acaaaaccaacttttttgaaaggttcggaagatgccatcattgactatgtttctgttgat
ggtactggctcaaagaactacctgcaaaaggttaacattcgtactcgacgcaccagatat
cctattattggcgataagtttagcagccggcatgggcagaagggtgtttgctctcagcta
tggcctgatgttgacatgccattttctgcagttacagggatgcgaccagatttaataatt
aatcctcatgcatttccttcgcgaatgactattggaatgcttttggagtcaattgcagct
aagggaggaagcctgcatggaaaatttgttgatgcaactcctttccctagatcaaattgc
aacgaagaagatgaagataagatatccaaatctagctcagtggttgatgaactaggtcca
atgctgactgcttacggtttcaactaccatggagtagaggtaatgcacagtggagtttat
ggaacagagctgacttgtgagatttttattgggcctgtttattaccagcggctccgccac
atggtttctgacaaatttcaggtgcgctccactggaactgtggatcagatcaccaggcaa
cccattggaggaaggaaacgaggtggaggtattcggtttggagaaatggaacgtgatgca
gttcttgctcatggagctgcctaccttttacatgacaggctccattcctgctccgactac
cacatagctgatgtatgttcctactgtggcagtgtactttctgccaccattatacaaccc
caaaagaagtcagcacgtgaaatccacggtctcccgcctgctagaactcccaagagctat
atatgccaagcttgcaaaaccagcaaaggaatggaaactgtggcgatgcctcacgtgttc
aagtatttggcagcagaattcacagcgatgaacataaaaatggatcttcagttgaggagc
caagcaagctaa
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integrated database retrieval system
